[BioSQL-l] Biopython documentation in BioSQL SVN

Peter biopython at maubp.freeserve.co.uk
Fri Aug 8 15:26:24 UTC 2008


>> However, there is some older LaTeX based documentation on our webpage,
>> http://biopython.org/DIST/docs/biosql/python_biosql_basic.html
>> http://biopython.org/DIST/docs/biosql/python_biosql_basic.pdf
>>
>> These are currently living in the BioSQL repository,
>...
>
>> What I would suggest is just to:
>>
>> (*) add a disclaimer to the top of python_biosql_basic.tex saying this
>>    document is depreciated, and giving a link to the wiki page,
>>    http://biopython.org/wiki/BioSQL
>
> Just send me a patch of the change you would like to make.

Better late than never?

Here is a patch against the SVN file python_biosql_basic.tex which
puts more emphasis on the wiki page, http://biopython.org/wiki/BioSQL
and also uses Bio.SeqIO rather than Bio.GenBank for the record
parsing.  This also removes the stub section "Python Cookbook Code".

Thanks,

Peter
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