[BioSQL-l] fill taxon_id field in bioentry from Seq object?

Hilmar Lapp hlapp at gmx.net
Wed Aug 27 19:11:09 UTC 2008


$seq->species->ncbi_taxon_id()

BTW feel free to post this to the BioPerl mailing list bioperl-l at lists.open-bio.org 
.

	-hilmar

On Aug 27, 2008, at 6:49 AM, Adam Witney wrote:

>
> On 27 Aug 2008, at 11:44, Peter wrote:
>
>> On Wed, Aug 27, 2008 at 11:28 AM, Adam Witney <awitney at sgul.ac.uk>  
>> wrote:
>>>
>>> is it possible to add a taxon_id to a Seq object such that when i  
>>> save it to
>>> my BioSQL database, it is stored in the bioentry table?
>>>
>>> thanks for any help
>>>
>>> adam
>>
>> Which Bio* binding for BioSQL are you trying to use?  BioPerl,
>> Biopython, BioJava etc
>
> sorry forgot to mention that bit.... I am using BioPerl
>
> thanks
>
> adam
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> BioSQL-l at lists.open-bio.org
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-- 
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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