[BioSQL-l] load_ncbi_taxonomy.pl

Gerben Menschaert Gerben.Menschaert at UGent.be
Mon Apr 24 14:52:35 UTC 2006


Hello,

In the bioperl-db INSTALL file I saw that it's necessary to preload the ncbi
taxonomy:

####################################################
LOAD THE NCBI TAXONOMY
You should pre-load the NCBI taxonomy database using the
scripts/load_ncbi_taxonomy.pl script in the BioSQL package.
Otherwise you will see errors from mis-parsed organisms when you
attempt to load sequences.
####################################################

I cannot find this load_ncbi_taxonomy.pl script. Is this (parsing the
organism info correctly) taken care of in the load_seqdatabase.pl script
now?

Regs,
Gerben Menschaert




More information about the BioSQL-l mailing list