[BioSQL-l] Error in load_ncbi_taxonomy.pl

[Aaron J Mackey]

Yeah, I just got bit by this today too; fixes are already checked in to
CVS; you'll need to reinstantiate the database from the .sql (or at least
the fktaxon foreign key constraint).

-Aaron

On Tue, 18 Mar 2003, Marc Colosimo wrote:

> I tried using load_ncbi_taxonomy.pl (Rev 1.3 from 119 mins) and got this
> error:
>
> [mcolosim]$ ./load_ncbi_taxonomy.pl -dbname bioseqdb -driver pg
> DBD::Pg::st execute failed: ERROR:  fktaxon_taxon referential integrity
> violation - key referenced from taxon not found in taxon at
> ./load_ncbi_taxonomy.pl line 142.
> DBD::Pg::st execute failed: ERROR:  fktaxon_taxon referential integrity
> violation - key referenced from taxon not found in taxon at
> ./load_ncbi_taxonomy.pl line 142.
>
>
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-- 
 Aaron J Mackey
 Pearson Laboratory
 University of Virginia
 (434) 924-2821
 amackey at virginia.edu