[BioRuby] Bio-MAF 1.0.1

[Fields, Christopher J]

I agree.  I think this is likely the most successful of the GSoC runs I've seen.  It definitely sets the bar high for the future.

chris

On Aug 22, 2012, at 2:33 AM, Francesco Strozzi <francesco.strozzi at gmail.com>
 wrote:

> Artem, Marjan, Clayton,
> 
> you all did a great job, it was a pleasure to follow your progresses
> as a co-mentor and clearly you achieved all the goals for your
> projects. Your tools are already on my personal list and will be used
> in production in the next months on our facility here in Italy.
> 
> Thanks for all the hard work and I hope you will stay in contact and
> contribute again with the community and the BioRuby people!
> 
> Francesco
> 
> On Wed, Aug 22, 2012 at 1:01 AM, Michael Barton
> <mail at michaelbarton.me.uk> wrote:
>> Yes, great work by both of you. I've enjoyed reading your blog posts and it has
>> great to see two bioinformaticians developing. Perhaps this may be obvious, I
>> think it is worth reiterating though: be sure to highlight this work when
>> applying for future positions. This is a great addition to your resume/CV.
>> 
>> Thanks also to the BioRuby members who have committed their time to organising
>> and mentoring during this GSOC.
>> 
>> Mike
>> 
>> On Tue, Aug 21, 2012 at 11:47:53PM +0200, Pjotr Prins wrote:
>> 
>>> Thank you Marjan and Clayton. It was our pleasure.
>>> 
>>> Pj.
>>> 
>>> On Tue, Aug 21, 2012 at 12:35:21PM -0700, Clayton Wheeler wrote:
>>> 
>>>> Hi all,
>>>> 
>>>> I've released bio-maf 1.0.1 and written a final GSoC blog post about
>>>> it:
>>>> 
>>>> http://csw.github.com/bioruby-maf/blog/2012/08/21/bio-maf_1.0.1/
>>>> 
>>>> This release should be substantially more robust, with solid and
>>>> reasonably-performing BGZF support, better CLI tools, and various
>>>> robustness, compatibility, and memory-footprint improvements.
>>>> 
>>>> (I've also developed a Galaxy integration for the maf_tile tool;
>>>> unlike the existing Galaxy MAF tools, this is capable of filling
>>>> in gaps with a FASTA reference sequence, and concatenating
>>>> the alignment output from several exons specified in a BED
>>>> file. It's not quite all packaged up with the toolshed facility
>>>> yet, but I should be able to wrap that up shortly. Sneak preview:
>>>> https://gist.github.com/3418576)
>>>> 
>>>> It's been a pleasure working with all of you, and I'm glad I've
>>>> been able to deliver something useful. Pjotr, Raoul, Francesco,
>>>> thanks for your help and advice this summer! Marjan, Artem, you
>>>> guys did excellent work and gave me some great suggestions in the
>>>> code reviews.  And, of course, thanks to Google for organizing and
>>>> funding this!
>>>> 
>>>> -- Clayton Wheeler cswh at umich.edu
>>>> ____________________________________________________________________
>>>> BioRuby Project - http://www.bioruby.org/
>>>> BioRuby mailing list BioRuby at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioruby
>>>> 
>>> ______________________________________________________________________
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>> 
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