[BioRuby] Failure: test_output_fasta(Bio::FuncTestSequenceOutputEMBL)

Peter Cock p.j.a.cock at googlemail.com
Fri Nov 25 14:32:50 UTC 2011


Hello all,

There seems to have been a new test failure or regression in Linux 64 Ruby 1.9,

Revision 48bd150a6180d59879872bd85dd95c7ddf1a19c0 passed,
http://testing.open-bio.org/bioruby/builders/Linux%2064%20-%20Ruby%201.9/builds/22/steps/test/logs/stdio
commit 48bd150a6180d59879872bd85dd95c7ddf1a19c0
Author: Naohisa Goto <ng at bioruby.org>
Date:   Tue Nov 22 17:32:23 2011 +0900
Test bug fix: fixed incomplete Windows platform detection.
https://github.com/bioruby/bioruby/commit/48bd150a6180d59879872bd85dd95c7ddf1a19c0

Revision 688779e71a27e861fb01e07f816384561b8cfe45 failed,
http://testing.open-bio.org/bioruby/builders/Linux%2064%20-%20Ruby%201.9/builds/23/steps/test/logs/stdio
commit 688779e71a27e861fb01e07f816384561b8cfe45
Author: Naohisa Goto <ng at bioruby.org>
Date:   Thu Nov 24 11:49:30 2011 +0900
Rakefile: new tasks: test-all to run all tests, etc.
https://github.com/bioruby/bioruby/commit/688779e71a27e861fb01e07f816384561b8cfe45

  1) Failure:
test_output_fasta(Bio::FuncTestSequenceOutputEMBL)
[/home/buildslave/BuildBot_BioRuby/lin1964/build/test/functional/bio/sequence/test_output_embl.rb:47]:
Exception raised:
<#<ArgumentError: wrong number of arguments (1 for 0)>>.

I hope that helps and that someone can reproduce the failure locally.
If need be I can try to bisect the failure here.

Peter



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