[BioRuby] Installing Ruby 1.9 on CentOS 5.4

Pjotr Prins pjotr.public14 at thebird.nl
Sat Nov 5 17:34:34 UTC 2011


It is a dependency. Should it not be in the BioRuby gemspec?

On Sun, Nov 06, 2011 at 02:16:49AM +0900, Naohisa Goto wrote:
> Hi Peter,
> 
> >   1) Error:
> > test_log(Bio::FuncTestSOAPWSDL):
> > NameError: uninitialized constant Bio::SOAPWSDL::SOAP
> (snip)
> >   2) Error:
> > test_set_log(Bio::FuncTestSOAPWSDL):
> > NameError: uninitialized constant Bio::SOAPWSDL::SOAP
> (snip)
> >   3) Error:
> > test_set_wsdl(Bio::FuncTestSOAPWSDL):
> > NameError: uninitialized constant Bio::SOAPWSDL::SOAP
> (snip)
> >   4) Error:
> > test_wsdl(Bio::FuncTestSOAPWSDL):
> > NameError: uninitialized constant Bio::SOAPWSDL::SOAP
> (snip)
> > 
> > 3704 tests, 21447 assertions, 0 failures, 4 errors, 0 skips
> > 
> > Test run options: --seed 21073
> >
> > Anyone care to comment on this NameError?
> 
> These 4 errors are caused by the drop of SOAP4R from the standard
> bundled library since Ruby 1.9. It is written in KNOWN_ISSUES.rdoc.
> 
> "gem install soap4r-ruby1.9" should solve the problem.
> This is described in the latest (unreleased) README.rdoc.
> 
> -- 
> Naohisa Goto
> ngoto at gen-info.osaka-u.ac.jp
> 
> _______________________________________________
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> BioRuby at lists.open-bio.org
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> 



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