[BioRuby] Fwd: Re: BioSQL development

Rob Syme rob.syme at gmail.com
Wed Sep 1 14:31:54 UTC 2010


I agree that db schemas and associated code should be implemented as
plugins. I haven't been keeping up-to-date with how the plugin system
works. From Pjotr's gff3 post
(http://thebird.nl/bioruby/BioRuby_GFF3.html) and github repo
(http://github.com/pjotrp/bioruby-gff3-plugin) it looks like we just
put our plugin under the Bio module and add the plugin lib dir to the
search path. Is this correct?
-r

On Wed, Sep 1, 2010 at 9:39 PM, Raoul Bonnal <bonnalraoul at ingm.it> wrote:
>
> Hello,
> I didn't start to map GFF3 to BioSQL in BioRuby, sorry for that.
> Theoretically if the format is readable in BioRuby as a BioSequence object then is possible to start to map it to the BioSQL schema.




More information about the BioRuby mailing list