[BioRuby] BioSQL development

Toshiaki Katayama ktym at hgc.jp
Sun Aug 22 07:44:33 UTC 2010


Hi Rob,

Thank you for your will to volunteer for the documentation.

Raoul is the current maintainer of the BioSQL module in BioRuby,
but I heard that he is on vacation for now.

Cheers,
Toshiaki Katayama


On 2010/08/22, at 15:22, Rob Syme wrote:

> Is there a particular person who has taken charge of the BioSQL part of
> Bioruby?
> I just want confirmation that I'm not using it in completely the wrong way.
> 
> Are the classes designed so that you generate models for an app (a rails
> app, for example) that inherit from the Bio::SQL::whatever? eg:
> 
> $ rails g model Biodatabase name:string authority:string description:text
> 
> and then in app/model/biodatabase.rb you change:
> class Biodatabase < ActiveRecord::Base
> end
> 
> into:
> class Biodatabase < Bio::SQL::Biodatabase # which inherits
> ActiveRecord::Base
> end
> 
> If I get a handle on this, I'd be happy to write it up for
> http://bioruby.open-bio.org/wiki/Tutorial#BioSQL
> 
> Thanks for all the work by the dev team. Much appreciated - I use bioruby
> almost every day.
> -r
> 
> Rob Syme
> _______________________________________________
> BioRuby Project - http://www.bioruby.org/
> BioRuby mailing list
> BioRuby at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioruby




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