[BioRuby] [Wg-phyloinformatics] bioruby classes for phyloxml support

Raoul JP Bonnal bonnalraoul at ingm.it
Wed May 27 07:05:28 UTC 2009


Diana Jaunzeikare ha scritto:
>
> BioRuby has Bio::SQL::Taxon and Bio::SQL::TaxonName classes, but they 
> are empty.
That classes are "activerecord models", they map the corresponding 
tables. You do not need to specify every table column in the model 
because the columns and getter/setter method are discovered/defined  
automatically by the framework (ActiveRecord).

You can create a  Bio::Taxon class and then in the same way we did with 
BioSequence object, the generic object/class, is mapped to its real 
container.

--
Ra






More information about the BioRuby mailing list