[BioRuby] Bioruby Website Problems

[Toshiaki Katayama]

Hi,

Sorry for any inconveniences.

I forgot to care about this, but it is due to our server replacement.
The bioruby.org services (including BioFetch server) will be unavailable until Oct 2nd.

Meanwhile, I can recommend you to use TogoWS service hosted at

http://togows.dbcls.jp/entry/pdb/2A06

which we have developed these months utilizing BioRuby functionality.

Regards,
Toshiaki Katayama

On 2008/09/30, at 10:55, Ben Woodcroft wrote:

> Hi,
>
> I am having problems using the bioruby.org site. My first problem was that
> the fetch function started giving me 404s:
>
>>> pdb = Bio::Fetch.new.fetch('PDB','2A06')
> OpenURI::HTTPError: 404 Not Found
>    from /usr/lib/ruby/1.8/open-uri.rb:277:in `open_http'
>    from /usr/lib/ruby/1.8/open-uri.rb:616:in `buffer_open'
>    from /usr/lib/ruby/1.8/open-uri.rb:164:in `open_loop'
>    from /usr/lib/ruby/1.8/open-uri.rb:162:in `catch'
>    from /usr/lib/ruby/1.8/open-uri.rb:162:in `open_loop'
>    from /usr/lib/ruby/1.8/open-uri.rb:132:in `open_uri'
>    from /home/ben/forays/bioruby_wwood/lib/bio/command.rb:223:in `read_uri'
>    from /home/ben/forays/bioruby_wwood/lib/bio/io/fetch.rb:109:in `fetch'
>    from (irb):13
>
> Went to bioruby.org/rdoc in firefox and that also fails. bioruby.org itself
> redirects to the Human Genome Center (Tokyo Uni) front page.
>
> Thanks,
> ben
>
> -- 
> FYI: My email addresses at unimelb, uq and gmail all redirect to the same
> place.
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