[BioRuby] Problem with autoload in lib/bio.rb

Pjotr Prins pjotr2008 at thebird.nl
Thu Aug 7 15:30:44 UTC 2008


Are you giving an include path (-I with ruby, or RUBYLIB environment
variable)? In irb you may be able to do:

$: << 'pathtobioruby/bioruby/lib'
require 'bio'


On Thu, Aug 07, 2008 at 04:20:23PM +0100, Michael Barton wrote:
> Hello,
> 
> I'm currently having some problems trying to use BioRuby from the source.
> Specifically I'm having problems try to access some of the applications
> defined using autoload in irb.
> 
> For example
> 
> > require 'lib/bio'
> > Bio::Iprscan
> LoadError: no such file to load -- bio/appl/iprscan/report
>     from (irb):4
> 
> Could anyone provide a suggestion as to what I'm doing wrong? I'm some what
> stuck at this point.
> 
> Thanks
> 
> Mike
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