[BioRuby] A couple of changes to DAS...

Toshiaki Katayama ktym at hgc.jp
Mon Jul 16 18:14:34 UTC 2007


Hi Dave,

I'm very sorry that I have missed your contribution.
I appreciate your fixes and congratulations to your Python version.

On 2007/06/07, at 7:18, Dave Thorne wrote:
> I have just spent a successful couple of hours porting the latest bio/io/das.rb file to Python (their DAS support is rather meagre). During the process I found a couple of lines in the original ruby module that I think contain mistakes. I have attached an appropriate diff file. The two small changes are as follows:
>
>    line 71:
>        dsn.mapmaster = e.name
>    should be (?):
>        dsn.mapmaster = e.text

I've just committed this.

>    line 97:
>        segment.stop = e.attributes['orientation']
>    should be:
>        segment.orientation = e.attributes['orientation']

This had already been fixed in the repository.

Thank you!

Regards,
Toshiaki Katayama





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