[BioRuby] proxy

[Jean-Philippe Vert]

wonderful!
thanks a lot, the first solution:

setenv SOAP_USE_PROXY on
setenv HTTP_PROXY myproxy:8080

works very well
ookini!

jp

Toshiaki Katayama wrote:

> Hi Vert,
>
> According to the SOAP4R documentation at
>   http://rrr.jin.gr.jp/doc/soap4r/RELEASE_en.html
> you will need to set two environmental variables or to create
> a configuration file (I have no proxy and have never tried).
>
> 1. set 'soap_use_proxy' variable with its value 'on' and
>    set 'http_proxy' variable with URL of your proxy as its value
>
> or
>
> 2. create a $RUBYLIB/soap/property file (where $RUBYLIB is the
>    directory of your choice something like $HOME/lib/ruby/ or
>    /usr/local/lib/ruby/site_ruby/1.8/ etc.) to specify the proxy like:
>      client.protocol.http.proxy = http://myproxy:8080
>
> Hope this helps,
> Toshiaki Katayama
>
>
> On 2004/03/16, at 19:54, Jean-Philippe Vert wrote:
>
>> Dear friends,
>>
>> I'd like to use the wonderful KEGG API with Ruby, but I can only 
>> connect to the web through a proxy. Would someone know what I should 
>> do to set up the proxy connection? For example, let's say I want to 
>> run the script:
>>
>> #!/usr/bin/env ruby
>> require 'bio'
>> serv = Bio::KEGG::API.new
>> puts serv.get_best_neighbors_by_gene('eco:b0002', 500, ['hin', 'bsu'])
>>
>> It does not work currently because it tries to connect directly. 
>> Should I change something in this code, or in a different 
>> configuration file?
>>
>> Thanks if you have time to answer this basic question, or give me a 
>> link.
>>
>> yoroshiku onegaishimasu
>> jp
>>
>> -- 
>> Jean-Philippe Vert
>> Ecole des Mines de Paris
>> http://www.cg.ensmp.fr/~vert
>>
>>
>> _______________________________________________
>> BioRuby mailing list
>> BioRuby at open-bio.org
>> http://portal.open-bio.org/mailman/listinfo/bioruby
>
>
> _______________________________________________
> BioRuby mailing list
> BioRuby at open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioruby
>
>

-- 
Jean-Philippe Vert
Ecole des Mines de Paris
http://www.cg.ensmp.fr/~vert