[BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates bg.gif, NONE, 1.1 console.png, NONE, 1.1 _classes.rhtml, 1.1, 1.2 _log.rhtml, 1.1, 1.2 _methods.rhtml, 1.2, 1.3 _modules.rhtml, 1.1, 1.2 bioruby.css, 1.4, 1.5 bioruby.rhtml, 1.3, 1.4 bioruby_controller.rb, 1.5, 1.6 commands.rhtml, 1.1, 1.2 index.rhtml, 1.3, 1.4
Katayama Toshiaki
k at dev.open-bio.org
Mon Jul 9 11:14:31 UTC 2007
Update of /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates
In directory dev.open-bio.org:/tmp/cvs-serv30101/templates
Modified Files:
_classes.rhtml _log.rhtml _methods.rhtml _modules.rhtml
bioruby.css bioruby.rhtml bioruby_controller.rb commands.rhtml
index.rhtml
Added Files:
bg.gif console.png
Log Message:
* Completely new design for BioRuby shell on Rails translated from
the 'DibdoltRed' theme on www.openwebdesign.org which is created by
Darjan Panic and Brian Green as a public domain work.
Index: _classes.rhtml
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_classes.rhtml,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** _classes.rhtml 24 Dec 2006 08:27:15 -0000 1.1
--- _classes.rhtml 9 Jul 2007 11:14:29 -0000 1.2
***************
*** 1,2 ****
--- 1,4 ----
[ <%= @class %> ]
+ <div id="class_list">
<%= @classes.map{ |x| reference_link(x) }.join(" > ") %>
+ </div>
\ No newline at end of file
Index: commands.rhtml
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/commands.rhtml,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** commands.rhtml 24 Dec 2006 08:27:15 -0000 1.1
--- commands.rhtml 9 Jul 2007 11:14:29 -0000 1.2
***************
*** 1,2 ****
--- 1,3 ----
+ <div id="command">
<h2>BioRuby shell commands</h2>
<ul>
***************
*** 5,7 ****
<% end %>
</ul>
!
--- 6,8 ----
<% end %>
</ul>
! </div>
\ No newline at end of file
Index: bioruby_controller.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby_controller.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** bioruby_controller.rb 28 Jun 2007 10:56:25 -0000 1.5
--- bioruby_controller.rb 9 Jul 2007 11:14:29 -0000 1.6
***************
*** 4,17 ****
HIDE_MODULES = [
! ActiveSupport::CoreExtensions::String::Iterators,
! ActiveSupport::CoreExtensions::String::StartsEndsWith,
! ActiveSupport::CoreExtensions::String::Inflections,
! ActiveSupport::CoreExtensions::String::Conversions,
! ActiveSupport::CoreExtensions::String::Access,
! ActiveSupport::CoreExtensions::String::Unicode,
! ActiveSupport::CoreExtensions::Numeric::Bytes,
! ActiveSupport::CoreExtensions::Numeric::Time,
! Base64::Deprecated, Base64, PP::ObjectMixin,
! Bio::Shell
]
HIDE_MODULES << WEBrick if defined?(WEBrick)
--- 4,8 ----
HIDE_MODULES = [
! Base64::Deprecated, Base64, PP::ObjectMixin, Bio::Shell,
]
HIDE_MODULES << WEBrick if defined?(WEBrick)
***************
*** 63,67 ****
script, result, output = Bio::Shell.cache[:results].restore(number)
@class = result.class
! @methods = result.methods - HIDE_METHODS
render :update do |page|
--- 54,58 ----
script, result, output = Bio::Shell.cache[:results].restore(number)
@class = result.class
! @methods = (result.methods - HIDE_METHODS).sort
render :update do |page|
Index: _modules.rhtml
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_modules.rhtml,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** _modules.rhtml 24 Dec 2006 08:27:15 -0000 1.1
--- _modules.rhtml 9 Jul 2007 11:14:29 -0000 1.2
***************
*** 1,2 ****
[ <%= @class %> ]
! <%= @modules.map {|x| reference_link(x) }.join(" | ") %>
--- 1,4 ----
[ <%= @class %> ]
! <div id="module_list">
! <%= @modules.map {|x| reference_link(x) }.sort.join("<br>") %>
! </div>
\ No newline at end of file
Index: bioruby.css
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.css,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** bioruby.css 28 Mar 2007 09:21:45 -0000 1.4
--- bioruby.css 9 Jul 2007 11:14:29 -0000 1.5
***************
*** 2,8 ****
body {
! color: #6e8377;
! background-color: #ffffff;
! font-family: verdana, arial, helvetica, sans-serif;
}
--- 2,50 ----
body {
! margin: 0;
! color: #555555;
! background: url("/images/bg.gif") repeat-y center;
! font-family: "trebuchet ms", verdana, arial, helvetica, sans-serif;
! font-size: 12px;
! }
!
! div#content {
! width: 750px;
! height: auto;
! margin: 0 auto 0 auto;
! text-align: left;
! }
!
! /* title */
!
! div#title {
! width: 550px;
! padding-right: 200px;
! margin-bottom: 20px;
! text-align: left;
! background: url("/images/bioruby.png") no-repeat left bottom;
! }
!
! div#title .titletop {
! color: #736451;
! font-size: 30px;
! font-weight: normal;
! text-align: left;
! text-indent: 70px;
! margin: 0;
! padding: 0;
! padding-top: 20px;
! margin-bottom: 10px;
! }
!
! div#title .titlesub {
! color: #000000;
! font-size: 15px;
! font-weight: normal;
! text-align: left;
! text-indent: 70px;
! margin: 0;
! padding: 0;
! border-bottom: 1px solid #eeeeee;
}
***************
*** 10,14 ****
div#main {
! width: 700px;
background-color: #ffffff;
padding-top: 0px;
--- 52,56 ----
div#main {
! width: 550px;
background-color: #ffffff;
padding-top: 0px;
***************
*** 20,23 ****
--- 62,66 ----
border: 1px solid #f00;
}
+
div#notice p {
margin: 0;
***************
*** 32,38 ****
--- 75,89 ----
border-width: 1px;
padding: 5px;
+ width: 500px;
overflow: auto;
}
+ div.log {
+ width: 500px;
+ margin-top: 15px;
+ padding-top: 5px;
+ border-top: 1px dotted #333333;
+ }
+
div.log div.input pre.script {
background-color: #ffffeb;
***************
*** 66,73 ****
}
! div.log hr.result {
border-style: dotted none none none;
border-top-width: 1px;
border-color: #6e8377;
height: 1px;
}
--- 117,125 ----
}
! div.log hr.log {
border-style: dotted none none none;
border-top-width: 1px;
border-color: #6e8377;
+ width: 200px;
height: 1px;
}
***************
*** 77,88 ****
div#side {
width: 150px;
! background-color: #ffffff;
! position: absolute;
! top: 10px;
! left: 10px;
}
div#side div.title {
border-width: 0px 0px 1px 0px;
}
--- 129,169 ----
div#side {
width: 150px;
! float: right;
! margin-top: 20px;
! text-align: left;
! font-size: 12px;
! color: #e44268;
}
div#side div.title {
+ font-weight: normal;
+ color: #e44268;
+ text-align: left;
border-width: 0px 0px 1px 0px;
+ border-bottom: 1px solid #e44268;
+ }
+
+ div#side a:link {
+ color: #ffffff;
+ text-decoration: none;
+ }
+
+ div#side a:visited {
+ color: #ffffff;
+ text-decoration: none;
+ }
+
+ div#side a:hover {
+ color: #cccccc;
+ text-decoration: underline;
+ }
+
+ div#side ol,ul {
+ margin: 10px;
+ padding-left: 10px;
+ }
+
+ div#side li {
+ color: #e44268;
}
***************
*** 93,97 ****
/* history */
! div#history {
}
--- 174,179 ----
/* history */
! div#history {
! width: 500px;
}
***************
*** 108,111 ****
--- 190,199 ----
}
+ /* command */
+
+ div#command {
+ width: 500px;
+ }
+
/* image */
***************
*** 115,118 ****
--- 203,207 ----
margin-left: auto;
margin-right: auto;
+ border: 0px;
}
***************
*** 208,216 ****
}
- table#list_methods {
- width: 680px;
- border: none;
- }
-
th {
vertical-align: top;
--- 297,300 ----
***************
*** 223,234 ****
}
/* textarea */
textarea {
font-family: monospace;
! font-size: 100%;
overflow: auto;
! width: 80%;
}
--- 307,346 ----
}
+ div#method_list table {
+ border: none;
+ }
+
+
+ /* form */
+
+ input {
+ background-color: #FFFFFF;
+ padding: 2px;
+ font-size: 10px;
+ color: #666666;
+ border: 1px solid #611022;
+ margin-bottom: 2px;
+ }
+
+ input[type=submit] {
+ background-color: #FFFFFF;
+ padding: 2px;
+ font-size: 10px;
+ color: #ffffff;
+ border: 1px solid #611022;
+ background-color: #E44268;
+ margin-bottom: 2px;
+ }
/* textarea */
textarea {
+ background: url("/images/console.png") no-repeat center;
+ background-color: #eaedeb;
font-family: monospace;
! font-size: 12px;
overflow: auto;
! width: 500px;
! padding: 5px;
}
***************
*** 252,256 ****
@media screen {
! div#main { margin-left: 150px; }
div#side { display: block; }
}
--- 364,368 ----
@media screen {
! div#main { margin-left: 0px; }
div#side { display: block; }
}
--- NEW FILE: console.png ---
(This appears to be a binary file; contents omitted.)
Index: _methods.rhtml
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_methods.rhtml,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** _methods.rhtml 16 Jan 2007 05:47:05 -0000 1.2
--- _methods.rhtml 9 Jul 2007 11:14:29 -0000 1.3
***************
*** 1,9 ****
[ <%= @class %> ]
! <table id="list_methods">
<tr>
<%- step = @methods.size / 4 + 1 -%>
<%- 0.step(@methods.size, step) do |i| -%>
! <td><%= @methods.sort[i, step].join("<br>") %></td>
<%- end -%>
</tr>
! </table>
\ No newline at end of file
--- 1,11 ----
[ <%= @class %> ]
! <div id="method_list">
! <table>
<tr>
<%- step = @methods.size / 4 + 1 -%>
<%- 0.step(@methods.size, step) do |i| -%>
! <td><%= @methods[i, step].join("<br>") %></td>
<%- end -%>
</tr>
! </table>
! </div>
Index: index.rhtml
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/index.rhtml,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** index.rhtml 28 Mar 2007 09:21:45 -0000 1.3
--- index.rhtml 9 Jul 2007 11:14:29 -0000 1.4
***************
*** 4,8 ****
<%- end -%>
<%= form_remote_tag(:url => {:action => "evaluate"}, :position => "top") %>
! <b>BioRuby script</b>
<input type="submit" value="Evaluate">
<input type="reset" value="Clear">
--- 4,9 ----
<%- end -%>
<%= form_remote_tag(:url => {:action => "evaluate"}, :position => "top") %>
! <b>BioRuby script:</b>
! <textarea id="script" name="script" rows=10 cols=80></textarea><br>
<input type="submit" value="Evaluate">
<input type="reset" value="Clear">
***************
*** 12,19 ****
<%= link_to_remote "Last 5", :url => {:action => "results", :limit => 5} %> |
<%= link_to_remote "Previous", :url => {:action => "results", :limit => 1} %>
! ] or [
! <%= link_to "Clear", :action => "index" %>
! ] results<br>
! <textarea id="script" name="script" rows=10 cols=80></textarea><br>
<%= end_form_tag %>
</div>
--- 13,19 ----
<%= link_to_remote "Last 5", :url => {:action => "results", :limit => 5} %> |
<%= link_to_remote "Previous", :url => {:action => "results", :limit => 1} %>
! ] or
! <%= link_to "Hide", :action => "index" %>
! results<br>
<%= end_form_tag %>
</div>
Index: _log.rhtml
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/_log.rhtml,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** _log.rhtml 16 Jan 2007 05:35:37 -0000 1.1
--- _log.rhtml 9 Jul 2007 11:14:29 -0000 1.2
***************
*** 1,4 ****
<div id="log_<%= @number %>" class="log">
- <hr class="log">
<div class="input">
Input: [<%= link_to_remote @number, :url => {:action => "reload_script", :number => @number} %>]
--- 1,3 ----
--- NEW FILE: bg.gif ---
(This appears to be a binary file; contents omitted.)
Index: bioruby.rhtml
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates/bioruby.rhtml,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** bioruby.rhtml 28 Jun 2007 10:56:25 -0000 1.3
--- bioruby.rhtml 9 Jul 2007 11:14:29 -0000 1.4
***************
*** 1,41 ****
! <html>
<head>
<title>BioRuby shell on Rails</title>
<%= stylesheet_link_tag "bioruby.css" %>
<%= javascript_include_tag :defaults %>
</head>
- <body>
-
- <div id="side">
- <img src="/images/bioruby.png">
- <br>
! <div class="title">Project</div>
! <ul>
! <li><%= link_to "#{File.basename(project_workdir)}", "file://#{project_workdir}" %>
! </ul>
! <div class="title">Functions</div>
! <ul>
! <li><%= link_to "Console", :action => "index" %></li>
! <li><%= link_to "History", :action => "history" %></li>
! <li><%= link_to "Commands", :action => "commands" %></li>
! </ul>
! <div class="title">Local variables</div>
! <%= render :partial => "variables" %>
! <br>
! <a href="http://bioruby.org/"><img src="/images/bioruby.gif" border=0></a>
! </div>
! <div id="main">
! <h1>BioRuby shell on Rails</h1>
<%= yield %>
! </div>
</body>
--- 1,47 ----
! <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
! <html xmlns="http://www.w3.org/1999/xhtml">
<head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>BioRuby shell on Rails</title>
<%= stylesheet_link_tag "bioruby.css" %>
<%= javascript_include_tag :defaults %>
</head>
! <body>
! <div id="content">
! <div id="side">
! <div class="title">Project</div>
! <ul>
! <li><%= link_to "#{File.basename(project_workdir)}", "file://#{project_workdir}" %>
! </ul>
! <div class="title">Functions</div>
! <ul>
! <li><%= link_to "Console", :action => "index" %></li>
! <li><%= link_to "History", :action => "history" %></li>
! <li><%= link_to "Commands", :action => "commands" %></li>
! </ul>
+ <div class="title">Local variables</div>
+ <%= render :partial => "variables" %>
! <br>
! <a href="http://bioruby.org/"><img src="/images/bioruby.gif" border=0></a>
! </div><!-- side -->
! <div id="title">
! <p class="titletop">BioRuby shell on Rails</p>
! <p class="titlesub">Web interface for the BioRuby library</p>
! </div><!-- title -->
+ <div id="main">
<%= yield %>
+ </div><!-- main -->
! </div><!-- content -->
</body>
+
+ </html>
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