[BioRuby-cvs] bioruby ChangeLog,1.73,1.74

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby
In directory dev.open-bio.org:/tmp/cvs-serv17878

Modified Files:
	ChangeLog 
Log Message:
changelog for changes of lib/bio/alignment.rb and test/unit/bio/test_alignment.rb are added.


Index: ChangeLog
===================================================================
RCS file: /home/repository/bioruby/bioruby/ChangeLog,v
retrieving revision 1.73
retrieving revision 1.74
diff -C2 -d -r1.73 -r1.74
*** ChangeLog	21 Dec 2007 05:14:44 -0000	1.73
--- ChangeLog	26 Dec 2007 14:14:41 -0000	1.74
***************
*** 1,2 ****
--- 1,23 ----
+ 2007-12-26  Naohisa Goto <ng at bioruby.org>
+ 
+ 	* lib/bio/alignment.rb
+ 
+ 	  Ruby 1.9 compliant: in EnumerableExtension#each_window and
+ 	  OriginalAlignment#index methods, local variable names outside the
+ 	  iterator loops are changed not to be shadowed by iterator
+ 	  variables.
+ 	  
+ 	  Warning messages for uninitialized instance variables of
+ 	  @gap_regexp, @gap_char, @missing_char, and @seqclass
+ 	  are suppressed.
+ 
+ 	* test/unit/bio/test_alignment.rb
+ 
+ 	  Ruby 1.9 compliant: Ruby 1.9 compliant: The last comma in Array.[]
+ 	  is no longer allowed. (For example,
+ 	    class A < Array; end; A[ 1, 2, 3, ]
+ 	  raises syntax error in Ruby 1.9.)
+ 
+ 	
  2007-12-21  Toshiaki Katayama <k at bioruby.org>