[BioRuby-cvs] bioruby/lib/bio/appl hmmer.rb,1.6,1.7

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/appl
In directory dev.open-bio.org:/tmp/cvs-serv773/lib/bio/appl

Modified Files:
	hmmer.rb 
Log Message:
* license is changed from LGPL to Ruby's


Index: hmmer.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/hmmer.rb,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** hmmer.rb	14 Jul 2006 14:26:39 -0000	1.6
--- hmmer.rb	19 Sep 2006 06:29:37 -0000	1.7
***************
*** 3,48 ****
  # 
  # Copyright::   Copyright (C) 2002 
! #               KATAYAMA Toshiaki <k at bioruby.org>
! # Lisence::     LGPL
  #
  # $Id$
  #
- # == Description
- #
- # A wrapper for the HMMER programs (hmmsearch or hmmpfam).
- #
- # == Examples
- #
- #   require 'bio'
- #   program = 'hmmsearch' # or 'hmmpfam'
- #   hmmfile = 'test.hmm'
- #   seqfile = 'test.faa'
- #   
- #   factory = Bio::HMMER.new(program, hmmfile, seqfile)
- #   p factory.query
- #
- # == References
- #
- # * HMMER
- #   http://hmmer.wustl.edu/
- #
- #--
- #
- #  This library is free software; you can redistribute it and/or
- #  modify it under the terms of the GNU Lesser General Public
- #  License as published by the Free Software Foundation; either
- #  version 2 of the License, or (at your option) any later version.
- #
- #  This library is distributed in the hope that it will be useful,
- #  but WITHOUT ANY WARRANTY; without even the implied warranty of
- #  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- #  Lesser General Public License for more details.
- #
- #  You should have received a copy of the GNU Lesser General Public
- #  License along with this library; if not, write to the Free Software
- #  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307  USA
- #
- #++
- #
  
  require 'bio/command'
--- 3,11 ----
  # 
  # Copyright::   Copyright (C) 2002 
! #               Toshiaki Katayama <k at bioruby.org>
! # Lisence::     Ruby's
  #
  # $Id$
  #
  
  require 'bio/command'
***************
*** 51,54 ****
--- 14,19 ----
  module Bio
  
+ # == Description
+ # 
  # A wapper for HMMER programs (hmmsearch or hmmpfam).
  #
***************
*** 62,66 ****
  #   factory = Bio::HMMER.new(program, hmmfile, seqfile)
  #   report = factory.query
! #   report.class #=> Bio::HMMER::Report
  #
  # === References
--- 27,31 ----
  #   factory = Bio::HMMER.new(program, hmmfile, seqfile)
  #   report = factory.query
! #   report.class # => Bio::HMMER::Report
  #
  # === References