[BioRuby-cvs] bioruby/lib/bio/db/embl uniprot.rb, 1.3, 1.4 swissprot.rb, 1.5, 1.6 trembl.rb, 1.5, 1.6

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/db/embl
In directory dev.open-bio.org:/tmp/cvs-serv32322/lib/bio/db/embl

Modified Files:
	uniprot.rb swissprot.rb trembl.rb 
Log Message:
* minor doc fix


Index: swissprot.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/embl/swissprot.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** swissprot.rb	8 May 2006 14:23:51 -0000	1.5
--- swissprot.rb	19 Sep 2006 06:01:48 -0000	1.6
***************
*** 2,13 ****
  # = bio/db/embl/swissprot.rb - SwissProt database class
  # 
! # Copyright::   Copyright (C) 2001, 2002 KATAYAMA Toshiaki <k at bioruby.org>
  # License::     Ruby's
  #
  #  $Id$
  #
  # == Description
  # 
! # Name space for SwissProt specific methods.
  #
  # SwissProt (before UniProtKB/SwissProt) specific methods are defined in 
--- 2,19 ----
  # = bio/db/embl/swissprot.rb - SwissProt database class
  # 
! # Copyright::   Copyright (C) 2001, 2002 Toshiaki Katayama <k at bioruby.org>
  # License::     Ruby's
  #
  #  $Id$
  #
+ 
+ require 'bio/db/embl/sptr'
+ 
+ module Bio
+ 
  # == Description
  # 
! # Parser class for SwissProt database entry. See also Bio::SPTR class.
! # This class holds name space for SwissProt specific methods.
  #
  # SwissProt (before UniProtKB/SwissProt) specific methods are defined in 
***************
*** 29,39 ****
  #   http://au.expasy.org/sprot/userman.html
  # 
- 
- require 'bio/db/embl/sptr'
- 
- module Bio
- 
- # Parser class for SwissProt database entry.
- # See also Bio::SPTR class.
  class SwissProt < SPTR
    # Nothing to do (SwissProt format is abstracted in SPTR)
--- 35,38 ----

Index: trembl.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/embl/trembl.rb,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** trembl.rb	8 May 2006 14:24:27 -0000	1.5
--- trembl.rb	19 Sep 2006 06:01:48 -0000	1.6
***************
*** 2,13 ****
  # = bio/db/embl/trembl.rb - TrEMBL database class
  # 
! # Copyright::   Copyright (C) 2001, 2002 KATAYAMA Toshiaki <k at bioruby.org>
! # License::     Ruby's
  #
! #  $Id$
  #
  # == Description
  #
! # Name space for TrEMBL specific methods.
  #
  # UniProtKB/SwissProt specific methods are defined in this class. 
--- 2,19 ----
  # = bio/db/embl/trembl.rb - TrEMBL database class
  # 
! # Copyright::  Copyright (C) 2001, 2002 Toshiaki Katayama <k at bioruby.org>
! # License::    Ruby's
  #
! # $Id$
  #
+ 
+ require 'bio/db/embl/sptr'
+ 
+ module Bio
+ 
  # == Description
  #
! # Parser class for TrEMBL database entry. See also Bio::SPTR class.
! # This class holds name space for TrEMBL specific methods.
  #
  # UniProtKB/SwissProt specific methods are defined in this class. 
***************
*** 29,39 ****
  #   http://au.expasy.org/sprot/userman.html
  # 
- 
- require 'bio/db/embl/sptr'
- 
- module Bio
- 
- # Parser class for TrEMBL database entry.
- # See also Bio::SPTR class.
  class TrEMBL < SPTR
    # Nothing to do (TrEMBL format is abstracted in SPTR)
--- 35,38 ----

Index: uniprot.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/db/embl/uniprot.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** uniprot.rb	8 May 2006 14:24:27 -0000	1.3
--- uniprot.rb	19 Sep 2006 06:01:48 -0000	1.4
***************
*** 2,13 ****
  # = bio/db/embl/uniprot.rb - UniProt database class
  # 
! # Copyright::   Copyright (C) 2005 KATAYAMA Toshiaki <k at bioruby.org>
! # License::     Ruby's
  #
  #  $Id$
  #
  # == Description
  # 
! # Name space for UniProtKB/SwissProt specific methods.
  #
  # UniProtKB/SwissProt specific methods are defined in this class. 
--- 2,19 ----
  # = bio/db/embl/uniprot.rb - UniProt database class
  # 
! # Copyright::  Copyright (C) 2005 Toshiaki Katayama <k at bioruby.org>
! # License::    Ruby's
  #
  #  $Id$
  #
+ 
+ require 'bio/db/embl/sptr'
+ 
+ module Bio
+ 
  # == Description
  # 
! # Parser class for SwissProt database entry.# See also Bio::SPTR class.
! # This class holds name space for UniProtKB/SwissProt specific methods.
  #
  # UniProtKB/SwissProt specific methods are defined in this class. 
***************
*** 28,39 ****
  # * The UniProtKB/SwissProt/TrEMBL User Manual
  #   http://www.expasy.org/sprot/userman.html
! 
! 
! require 'bio/db/embl/sptr'
! 
! module Bio
! 
! # Parser class for SwissProt database entry.
! # See also Bio::SPTR class.
  class UniProt < SPTR
    # Nothing to do (UniProt format is abstracted in SPTR)
--- 34,38 ----
  # * The UniProtKB/SwissProt/TrEMBL User Manual
  #   http://www.expasy.org/sprot/userman.html
! #
  class UniProt < SPTR
    # Nothing to do (UniProt format is abstracted in SPTR)