[BioRuby-cvs] bioruby/test/data/aaindex DAYM780301, NONE, 1.1 HENS920102, 1.1, NONE

Mitsuteru C. Nakao nakao at pub.open-bio.org
Wed Feb 22 05:07:38 UTC 2006


Update of /home/repository/bioruby/bioruby/test/data/aaindex
In directory pub.open-bio.org:/tmp/cvs-serv32206/test/data/aaindex

Added Files:
	DAYM780301 
Removed Files:
	HENS920102 
Log Message:
* test_aaindex.rb: changed test data (HENS920102 -> DAYM780301) for Bio::AAindex2.
* DAYM780301: newly added.
* HENS920102: removed.


--- HENS920102 DELETED ---

--- NEW FILE: DAYM780301 ---
H DAYM780301
D Log odds matrix for 250 PAMs (Dayhoff et al., 1978)
R
A Dayhoff, M.O., Schwartz, R.M. and Orcutt, B.C.
T A model of evolutionary change in proteins
J In "Atlas of Protein Sequence and Structure", Vol.5, Suppl.3 (Dayhoff,
  M.O., ed.), National Biomedical Research Foundation, Washington, D.C.,
  p.352 (1978)
M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV
      2.
     -2.      6.
      0.      0.      2.
      0.     -1.      2.      4.
     -2.     -4.     -4.     -5.     12.
      0.      1.      1.      2.     -5.      4.
      0.     -1.      1.      3.     -5.      2.      4.
      1.     -3.      0.      1.     -3.     -1.      0.      5.
     -1.      2.      2.      1.     -3.      3.      1.     -2.      6.
     -1.     -2.     -2.     -2.     -2.     -2.     -2.     -3.     -2.      5.
     -2.     -3.     -3.     -4.     -6.     -2.     -3.     -4.     -2.      2.      6.
     -1.      3.      1.      0.     -5.      1.      0.     -2.      0.     -2.     -3.      5.
     -1.      0.     -2.     -3.     -5.     -1.     -2.     -3.     -2.      2.      4.      0.      6.
     -4.     -4.     -4.     -6.     -4.     -5.     -5.     -5.     -2.      1.      2.     -5.      0.      9.
      1.      0.     -1.     -1.     -3.      0.     -1.     -1.      0.     -2.     -3.     -1.     -2.     -5.      6.
      1.      0.      1.      0.      0.     -1.      0.      1.     -1.     -1.     -3.      0.     -2.     -3.      1.      2.
      1.     -1.      0.      0.     -2.     -1.      0.      0.     -1.      0.     -2.      0.     -1.     -3.      0.      1.      3.
     -6.      2.     -4.     -7.     -8.     -5.     -7.     -7.     -3.     -5.     -2.     -3.     -4.      0.     -6.     -2.     -5.     17.
     -3.     -4.     -2.     -4.      0.     -4.     -4.     -5.      0.     -1.     -1.     -4.     -2.      7.     -5.     -3.     -3.      0.     10.
      0.     -2.     -2.     -2.     -2.     -2.     -2.     -1.     -2.      4.      2.     -2.      2.     -1.     -1.     -1.      0.     -6.     -2.      4.
//




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