[BioRuby-cvs] bioruby/doc KEGG_API.rd, 1.2, 1.3 KEGG_API.rd.ja, 1.8, 1.9

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/doc
In directory dev.open-bio.org:/tmp/cvs-serv2234

Modified Files:
	KEGG_API.rd KEGG_API.rd.ja 
Log Message:
* updated to KEGG API v6.0


Index: KEGG_API.rd.ja
===================================================================
RCS file: /home/repository/bioruby/bioruby/doc/KEGG_API.rd.ja,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** KEGG_API.rd.ja	23 Feb 2006 04:51:23 -0000	1.8
--- KEGG_API.rd.ja	24 Dec 2006 10:14:19 -0000	1.9
***************
*** 20,23 ****
--- 20,24 ----
    * ((<Ruby ¤Î¾ì¹ç>))
    * ((<Perl ¤Î¾ì¹ç>))
+     * ((<Perl ¤ÎÃí°ÕÅÀ>))
    * ((<Python ¤Î¾ì¹ç>))
    * ((<Java ¤Î¾ì¹ç>))
***************
*** 31,98 ****
      * ((<LinkDBRelation ·¿>)), ((<ArrayOfLinkDBRelation ·¿>))
      * ((<PathwayElement ·¿>)), ((<ArrayOfPathwayElement ·¿>))
[...1530 lines suppressed...]
+ ¥¢¥é¥¤¥ó¥á¥ó¥È¤µ¤ì¤¿¶¦ÄÌÉôʬ¤Î¥Î¡¼¥ÉÈֹ椬ÇÛÎó¤ÇÊÖ¤µ¤ì¤ë¤Î¤Ç¡¢
+ ¥¢¥é¥¤¥ó¥á¥ó¥È¤µ¤ì¤¿Åüº¿¤Î¹½Â¤¤ò bget ¥³¥Þ¥ó¥É¤Ë "-f k"
+ ¥ª¥×¥·¥ç¥ó¤ò¤Ä¤±¤Æ KCF ¥Õ¥©¡¼¥Þ¥Ã¥È¤Ç¼èÆÀ¤·¡¢Âбþ¤ò³Îǧ¤·¤Þ¤¹¡£
+ 
+ ÌáÃÍ¡§
+   ArrayOfStructureAlignment
+ 
+ Î㡧
+   kcf = bget("-f k gl:G12922")
+   search_glycans_by_kcam(kcf, "gapped", "local", 1, 5)
+ 
+ ´ØÏ¢ URL¡§
+   * ((<URL:http://www.genome.jp/ligand-bin/search_glycan.cgi>))
+   * ((<URL:http://www.genome.jp/ligand/kcam/>))
  
  == Notes
  
! Last updated: November 20, 2006
  
  =end

Index: KEGG_API.rd
===================================================================
RCS file: /home/repository/bioruby/bioruby/doc/KEGG_API.rd,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** KEGG_API.rd	23 Feb 2006 04:51:23 -0000	1.2
--- KEGG_API.rd	24 Dec 2006 10:14:19 -0000	1.3
***************
*** 81,148 ****
      * ((<LinkDBRelation>)), ((<ArrayOfLinkDBRelation>))
      * ((<PathwayElement>)), ((<ArrayOfPathwayElement>))
    * ((<Methods>))
      * ((<Meta information>))
!       * ((<list_databases>)),
!         ((<list_organisms>)),
!         ((<list_pathways>))
      * ((<DBGET>))
!       * ((<binfo>)),
!         ((<bfind>)),
[...1502 lines suppressed...]
+ 
+ You can obtain a KCF formatted structural data of matched glycans
+ using bget method with the "-f k" option to confirm the alignment.
+ 
+ Return value:
+   ArrayOfStructureAlignment
+ 
+ Example:
+   kcf = bget("-f k gl:G12922")
+   search_glycans_by_kcam(kcf, "gapped", "local", 1, 5)
+ 
+ Related site:
+   * ((<URL:http://www.genome.jp/ligand-bin/search_glycan.cgi>))
+   * ((<URL:http://www.genome.jp/ligand/kcam/>))
  
  == Notes
  
! Last updated: November 20, 2006
  
  =end