[BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,1.14,1.15

Katayama Toshiaki k at dev.open-bio.org
Sun Dec 24 08:46:52 UTC 2006


Update of /home/repository/bioruby/bioruby/lib/bio/shell/plugin
In directory dev.open-bio.org:/tmp/cvs-serv9812

Modified Files:
	codon.rb 
Log Message:
* changed to use Bio::Shell.colors instead of Bio::Shell.esc_seq


Index: codon.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/shell/plugin/codon.rb,v
retrieving revision 1.14
retrieving revision 1.15
diff -C2 -d -r1.14 -r1.15
*** codon.rb	19 Sep 2006 06:17:19 -0000	1.14
--- codon.rb	24 Dec 2006 08:46:50 -0000	1.15
***************
*** 36,50 ****
  
      def setup_colors
!       esc_seq = Bio::Shell.esc_seq
  
        @colors = {
!         :text		=> esc_seq[:none],
!         :aa		=> esc_seq[:green],
!         :start		=> esc_seq[:red],
!         :stop		=> esc_seq[:red],
!         :basic		=> esc_seq[:cyan],
!         :polar		=> esc_seq[:blue],
!         :acidic		=> esc_seq[:magenta],
!         :nonpolar	=> esc_seq[:yellow],
        }
      end
--- 36,50 ----
  
      def setup_colors
!       c = Bio::Shell.colors
  
        @colors = {
!         :text		=> c[:none],
!         :aa		=> c[:green],
!         :start		=> c[:red],
!         :stop		=> c[:red],
!         :basic		=> c[:cyan],
!         :polar		=> c[:blue],
!         :acidic		=> c[:magenta],
!         :nonpolar	=> c[:yellow],
        }
      end




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