[BioRuby-cvs] bioruby/lib bio.rb,1.72,1.73

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib
In directory dev.open-bio.org:/tmp/cvs-serv15819/lib

Modified Files:
	bio.rb 
Log Message:
New files/classes: Bio::GCG::Msf in lib/bio/appl/gcg/msf.rb for GCG msf 
multiple sequence alignment format parser, and Bio::GCG::Seq in 
lib/bio/appl/gcg/seq.rb for GCG sequence format parser.

Autoload of the classes (in bio.rb) and file format autodetection
(in flatfile.rb) are also supported.

Bio::Alignment::Output#output_msf, #output(:msf, ...) are added
to generate msf formatted string from multiple alignment object.


Index: bio.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio.rb,v
retrieving revision 1.72
retrieving revision 1.73
diff -C2 -d -r1.72 -r1.73
*** bio.rb	13 Dec 2006 16:29:36 -0000	1.72
--- bio.rb	14 Dec 2006 19:52:53 -0000	1.73
***************
*** 231,234 ****
--- 231,238 ----
    autoload :Blat,           'bio/appl/blat/report'
    
+   module GCG
+     autoload :Msf,          'bio/appl/gcg/msf'
+     autoload :Seq,          'bio/appl/gcg/seq'
+   end
  
    ### Utilities