[BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb,1.15,1.16

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio/appl
In directory dev.open-bio.org:/tmp/cvs-serv14194

Modified Files:
	clustalw.rb 
Log Message:
changed to use output_fasta instead of to_fasta


Index: clustalw.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/clustalw.rb,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** clustalw.rb	14 Dec 2006 16:04:02 -0000	1.15
--- clustalw.rb	14 Dec 2006 16:05:59 -0000	1.16
***************
*** 102,106 ****
          break if seqtype
        end
!       query_string(seqs.to_fasta(70, :avoid_same_name => true), seqtype)
      end
  
--- 102,106 ----
          break if seqtype
        end
!       query_string(seqs.output_fasta(70, :avoid_same_name => true), seqtype)
      end