[BioRuby-cvs] bioruby/lib/bio alignment.rb,1.16,1.17

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio
In directory dev.open-bio.org:/tmp/cvs-serv9231/lib/bio

Modified Files:
	alignment.rb 
Log Message:
changed RDoc


Index: alignment.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/alignment.rb,v
retrieving revision 1.16
retrieving revision 1.17
diff -C2 -d -r1.16 -r1.17
*** alignment.rb	30 Apr 2006 05:56:40 -0000	1.16
--- alignment.rb	13 Dec 2006 16:58:39 -0000	1.17
***************
*** 2,7 ****
  # = bio/alignment.rb - multiple alignment of sequences
  #
! # Copyright:: Copyright (C) 2003, 2005
! #             GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
  #
  # License:: Ruby's
--- 2,7 ----
  # = bio/alignment.rb - multiple alignment of sequences
  #
! # Copyright:: Copyright (C) 2003, 2005, 2006
! #             GOTO Naohisa <ng at bioruby.org>
  #
  # License:: Ruby's
***************
*** 26,69 ****
  module Bio
  
! =begin rdoc
! 
! = About Bio::Alignment
! 
! Bio::Alignment is a namespace of classes/modules for multiple sequence
! alignment.
! 
! = Multiple alignment container classes
! 
! == Bio::Alignment::OriginalAlignment
! 
! == Bio::Alignment::SequenceArray
! 
! == Bio::Alignment::SequenceHash
! 
! = Bio::Alignment::Site
! 
! = Modules
! 
! == Bio::Alignment::EnumerableExtension
! 
! Mix-in for classes included Enumerable.
! 
! == Bio::Alignment::ArrayExtension
! 
! Mix-in for Array or Array-like classes.
! 
! == Bio::Alignment::HashExtension
! 
! Mix-in for Hash or Hash-like classes.
! 
! == Bio::Alignment::SiteMethods
! 
! == Bio::Alignment::PropertyMethods
! 
! = Bio::Alignment::GAP
! 
! = Compatibility from older BioRuby
! 
! =end
    module Alignment
  
--- 26,67 ----
  module Bio
  
! # 
! # = About Bio::Alignment
! # 
! # Bio::Alignment is a namespace of classes/modules for multiple sequence
! # alignment.
! # 
! # = Multiple alignment container classes
! # 
! # == Bio::Alignment::OriginalAlignment
! # 
! # == Bio::Alignment::SequenceArray
! # 
! # == Bio::Alignment::SequenceHash
! # 
! # = Bio::Alignment::Site
! # 
! # = Modules
! # 
! # == Bio::Alignment::EnumerableExtension
! # 
! # Mix-in for classes included Enumerable.
! # 
! # == Bio::Alignment::ArrayExtension
! # 
! # Mix-in for Array or Array-like classes.
! # 
! # == Bio::Alignment::HashExtension
! # 
! # Mix-in for Hash or Hash-like classes.
! # 
! # == Bio::Alignment::SiteMethods
! # 
! # == Bio::Alignment::PropertyMethods
! # 
! # = Bio::Alignment::GAP
! # 
! # = Compatibility from older BioRuby
! # 
    module Alignment