[BioRuby-cvs] bioruby ChangeLog,1.40,1.41

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby
In directory pub.open-bio.org:/tmp/cvs-serv15766

Modified Files:
	ChangeLog 
Log Message:
* updated on changes by Katayama made during the Karuizawa camp


Index: ChangeLog
===================================================================
RCS file: /home/repository/bioruby/bioruby/ChangeLog,v
retrieving revision 1.40
retrieving revision 1.41
diff -C2 -d -r1.40 -r1.41
*** ChangeLog	9 Sep 2005 16:10:47 -0000	1.40
--- ChangeLog	26 Sep 2005 06:59:40 -0000	1.41
***************
*** 1,2 ****
--- 1,36 ----
+ 2005-09-25  Toshiaki Katayama <k at bioruby.org>
+ 
+ 	* README.DEV
+ 
+ 	  Newly added guideline document for the contributors.
+ 
+ 	* README
+ 
+ 	  Updated and added instructions on RubyGems.
+ 
+ 2005-09-23  Toshiaki Katayama <k at bioruby.org>
+ 
+ 	* bin/bioruby, lib/bio/shell.rb, lib/bio/shell/core.rb,
+ 	  lib/bio/shell/session.rb, lib/bio/shell/plugin/seq.rb,
+ 	  lib/bio/shell/flatfile.rb, lib/bio/shell/obda.rb
+ 
+ 	  Newly added BioRuby shell, the command line user interface.
+ 	  Try 'bioruby' command in your terminal.
+ 
+ 	* doc/Changes-0.7.rd
+ 
+ 	  Newly added document describing incompatible and important
+ 	  changes between the BioRuby 0.6 and 0.7 versions.
+ 
+ 	* lib/bio/sequence.rb
+ 
+ 	  Bio::Sequence.guess, Bio::Sequence#guess methods are added
+ 	  which guess the sequence type by following fomula (default
+ 	  value for the threshold is 0.9).
+ 
+ 	              number of ATGC
+ 	  --------------------------------------- > threshold
+ 	    number of other chars - number of N
+ 
  2005-09-10  Naohisa Goto <ng at bioruby.org>