[BioRuby-cvs] bioruby/lib bio.rb,1.47,1.48

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib
In directory pub.open-bio.org:/tmp/cvs-serv21239/lib

Modified Files:
	bio.rb 
Log Message:
* fixed autoload problem about Bio::Blast.
* changed not to require bio/db.rb in format0.rb.


Index: bio.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio.rb,v
retrieving revision 1.47
retrieving revision 1.48
diff -C2 -d -r1.47 -r1.48
*** bio.rb	9 Sep 2005 14:38:10 -0000	1.47
--- bio.rb	9 Sep 2005 14:59:52 -0000	1.48
***************
*** 161,167 ****
    autoload :DBGET,          'bio/io/dbget'
  
!   class Blast
!     autoload :Fastacmd,     'bio/io/fastacmd'
!   end
  
    class KEGG
--- 161,168 ----
    autoload :DBGET,          'bio/io/dbget'
  
!   ## below are described in bio/appl/blast.rb
!   #class Blast
!   #  autoload :Fastacmd,     'bio/io/fastacmd'
!   #end
  
    class KEGG
***************
*** 187,196 ****
  
    autoload :Blast,          'bio/appl/blast'
!   class Blast
!     autoload :Report,       'bio/appl/blast/report'
!     autoload :Default,      'bio/appl/blast/format0'
!     autoload :WU,           'bio/appl/blast/wublast'
!     autoload :Bl2seq,       'bio/appl/bl2seq/report'
!   end
  
    autoload :HMMER,          'bio/appl/hmmer'
--- 188,199 ----
  
    autoload :Blast,          'bio/appl/blast'
!   ## below are described in bio/appl/blast.rb
!   #class Blast
!   #  autoload :Fastacmd,     'bio/io/fastacmd'
!   #  autoload :Report,       'bio/appl/blast/report'
!   #  autoload :Default,      'bio/appl/blast/format0'
!   #  autoload :WU,           'bio/appl/blast/wublast'
!   #  autoload :Bl2seq,       'bio/appl/bl2seq/report'
!   #end
  
    autoload :HMMER,          'bio/appl/hmmer'