[BioRuby-cvs] bioruby/lib/bio/appl/sosui report.rb,1.4,1.5

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/appl/sosui
In directory pub.open-bio.org:/tmp/cvs-serv9021/lib/bio/appl/sosui

Modified Files:
	report.rb 
Log Message:
* expanded tab at the line head


Index: report.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/sosui/report.rb,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** report.rb	8 Sep 2003 05:46:25 -0000	1.4
--- report.rb	8 Sep 2005 01:22:10 -0000	1.5
***************
*** 31,41 ****
  
        def initialize(entry)
! 	entry       = entry.split(/\n/)
  
! 	@entry_id   = entry[0].strip.sub(/^>/,'')
! 	@prediction = entry[1].strip
! 	@tmh        = []
! 	@tmhs       = 0
! 	parse_tmh(entry) if /MEMBRANE/ =~ @prediction
        end
  
--- 31,41 ----
  
        def initialize(entry)
!         entry       = entry.split(/\n/)
  
!         @entry_id   = entry[0].strip.sub(/^>/,'')
!         @prediction = entry[1].strip
!         @tmh        = []
!         @tmhs       = 0
!         parse_tmh(entry) if /MEMBRANE/ =~ @prediction
        end
  
***************
*** 46,60 ****
  
        def parse_tmh(entry)
! 	entry.each do |line|
! 	  if /NUMBER OF TM HELIX = (\d+)/ =~ line
! 	    @tmhs = $1
! 	  elsif /TM (\d+) +(\d+)- *(\d+) (\w+) +(\w+)/ =~ line
! 	    tmp = {'TMH'   => $1.to_i, 
! 	           'range' => Range.new($2.to_i, $3.to_i), 
! 	           'grade' => $4, 
! 	           'seq'   => $5 }
! 	    @tmh.push(tmp)
! 	  end
! 	end
        end
  
--- 46,60 ----
  
        def parse_tmh(entry)
!         entry.each do |line|
!           if /NUMBER OF TM HELIX = (\d+)/ =~ line
!             @tmhs = $1
!           elsif /TM (\d+) +(\d+)- *(\d+) (\w+) +(\w+)/ =~ line
!             tmp = {'TMH'   => $1.to_i, 
!                    'range' => Range.new($2.to_i, $3.to_i), 
!                    'grade' => $4, 
!                    'seq'   => $5 }
!             @tmh.push(tmp)
!           end
!         end
        end