[BioRuby-cvs] bioruby/lib/bio alignment.rb,1.9,1.10

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio
In directory pub.open-bio.org:/tmp/cvs-serv21161

Modified Files:
	alignment.rb 
Log Message:
completely rewritten.
too many changes.

changes will be described in the document later


Index: alignment.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/alignment.rb,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10
*** alignment.rb	26 Sep 2005 13:00:04 -0000	1.9
--- alignment.rb	24 Nov 2005 16:21:00 -0000	1.10
***************
*** 1,7 ****
  #
! # bio/alignment.rb - multiple alignment of sequences
  #
! #   Copyright (C) 2003 GOTO Naohisa <ngoto at gen-info.osaka-u.ac.jp>
  #
  #  This library is free software; you can redistribute it and/or
  #  modify it under the terms of the GNU Lesser General Public
--- 1,13 ----
  #
! # = bio/alignment.rb - multiple alignment of sequences
[...2932 lines suppressed...]
!     # Please refer document of OriginalAlignment.new.
!     def self.new(*arg)
!       OriginalAlignment.new(*arg)
!     end
  
!     # creates a new Bio::Alignment::OriginalAlignment object.
!     # Please refer document of OriginalAlignment.new2.
!     def self.new2(*arg)
!       OriginalAlignment.new2(*arg)
!     end
  
!     # creates a new Bio::Alignment::OriginalAlignment object.
!     # Please refer document of OriginalAlignment.readfiles.
!     def self.readfiles(*files)
!       OriginalAlignment.readfiles(*files)
!     end
!   end #class Alignment
  
! end #module Bio