<div dir="ltr">Hello Peter, <div><br></div><div>Thank you for your feedback. I confirmed with the developer of Infernal, and both the tabular and plain text output format are stable. The code is ready. I will open a pull request on GitHub. </div><div><br></div><div><br></div><div>Samuel</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Sep 17, 2024 at 12:18 PM Peter Cock <<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Hello Samuel,</div><div><br></div><div>Looking back over old emails, someone once suggested including an Infernal parser as part of Bio.SearchIO - I've not used the tool but that sounds a sensible home. I would probably focus on the tabular output as being simpler and more robust to parse, but if the text output is stable that could be OK. I am wary given the history of the BLAST text output which changed lots over the years.<br></div><br><div>Peter</div><div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Sep 16, 2024 at 7:52 PM Samuel Prince <<a href="mailto:samuel.ed.prince@gmail.com" target="_blank">samuel.ed.prince@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hello, <div><br></div><div>I am writing a BioPython parser for Infernal (cmsearch and cmscan) standard text and tabular output. Would that be useful enough to be added to BioPython? Are there any specific aspects that I should know before contributing to this? </div><div><br></div><div><br></div><div>Thank you, </div><div>Samuel <br></div></div>
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