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<div dir="ltr" data-setdir="false">Hi Travis,</div><div dir="ltr" data-setdir="false"><br></div><div dir="ltr" data-setdir="false">I would suggest to wait until the dust settles on `Alignment` / `MultipleSeqAlignment`, which hopefully won't take too long.</div><div dir="ltr" data-setdir="false"><br></div><div dir="ltr" data-setdir="false">Best,</div><div dir="ltr" data-setdir="false">-Michiel<br></div><div><br></div>
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On Monday, June 21, 2021, 11:23:17 PM GMT+9, Travis Wrightsman <tw493@cornell.edu> wrote:
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<div><div dir="ltr">Dear Biopython Devs,<br></div><div dir="ltr"><br></div><div dir="ltr">I have code that I wrote to generate a new MultipleSeqAlignment that has <br></div><div dir="ltr">columns removed if they contained gaps in the first sequence. If I <br></div><div dir="ltr">generalized this code to return a MultipleSeqAlignment with gaps removed <br></div><div dir="ltr">in any specified record row, would this be something Biopython would want <br></div><div dir="ltr">included?<br></div><div dir="ltr"><br></div><div dir="ltr">I also see the Alignment class looks to be the new, more general way to <br></div><div dir="ltr">work with alignments in 1.80, should I implement this on <br></div><div dir="ltr">MultipleSeqAlignment or Alignment?<br></div><div dir="ltr"><br></div><div dir="ltr">Travis<br></div><div dir="ltr">_______________________________________________<br></div><div dir="ltr">Biopython mailing list - <a ymailto="mailto:Biopython@biopython.org" href="mailto:Biopython@biopython.org">Biopython@biopython.org</a><br></div><div dir="ltr"><a href="https://mailman.open-bio.org/mailman/listinfo/biopython" target="_blank">https://mailman.open-bio.org/mailman/listinfo/biopython</a><br></div></div>
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