<div dir="ltr">Thanks Dave - didn't expect to see you here ;)<div><br></div><div>I'll get the talk slides recorded first, and then we can fix up the abstract accordingly.<div><br></div><div>Kind regards,</div><div><br></div><div>Peter</div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sun, Jul 5, 2020 at 9:48 PM Dave Clements <<a href="mailto:clementsgalaxy@gmail.com">clementsgalaxy@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>HI Michael,</div><div><br></div><div>Send me an updated PDF, and I can update the <a href="http://bcc2020.sched.com" target="_blank">bcc2020.sched.com</a> site.</div><div><br></div><div>Cheers,</div><div>Dave C<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Jul 4, 2020 at 6:00 PM Peter Cock <<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Hello all,</div><div><br></div><div>Unfortunately I missed the official window to update the abstract, too much going on with COVID-19 lockdown etc. But I could ask the rest of the committee nicely?</div><div><br></div><div>Right now though, I need to finish the slides this weekend ready to submit a recorded video version on Monday 6 July. The most practical way to do that seems to be with Microsoft Powerpoint (I know how to record audio for each slide, do the timings, and export a video).</div><div><br></div><div>If you want to see the current draft, please email me (off list is fine). I'll send a copy directly now to a few people whose work is specifically mentioned,</div><div><br></div><div>Thanks all,</div><div><br></div><div>Peter</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Jun 13, 2020 at 6:10 AM Michiel de Hoon <<a href="mailto:mjldehoon@yahoo.com" target="_blank">mjldehoon@yahoo.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div style="font-family:"Helvetica Neue",Helvetica,Arial,sans-serif;font-size:10px"><div></div>
<div dir="ltr">For novel functionality (see the first reviewer) you could point to the new pairwise sequence aligner in Biopython. It is as fast as aligners implemented as standalone (C/C++) programs, maybe even faster if you want to align many sequences, but much more flexible. I don't know of any existing programs that offer this speed and flexibility.</div><div dir="ltr"><br></div><div dir="ltr">Best,</div><div dir="ltr">-Michiel<br></div><div><br></div>
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On Sunday, June 7, 2020, 9:16:22 PM GMT+9, Peter Cock <<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>> wrote:
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<div><div id="gmail-m_481517577697319452gmail-m_7220801367383398760gmail-m_8140116494524187432yiv5886065702"><div dir="ltr">Good news: The abstract was accepted for a lightning talk, and we have the opportunity to improve the abstract (see reviews below).<div><br></div><div>Specifically I think we should add something about the alphabet changes underway on GitHub (which in hindsight I wish we'd drawn more attention to in the NEWS file for Biopython 1.78). Quoting the DEPRECATED file,</div><div><br></div><div>"The design of Bio.Aphabet included a number of historic design choices which, with the benefit of hindsight, were regretable. While the details remain to be agreed, we intend to remove or replace Bio.Alphabet in 2020."</div><div><br></div><div>GMail has just flagged that regrettable was misspelt. Opps.</div><div><br></div><div>The BOSC/BCC 20202 abstract is here:</div><div><br></div><div><a rel="nofollow" href="https://github.com/biopython/talks/tree/master/2020_BOSC/abstract" target="_blank">https://github.com/biopython/talks/tree/master/2020_BOSC/abstract</a><br></div><div><br></div><div>Peter<br></div></div></div><br></div>
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