<div dir="ltr"><div dir="ltr">Good news I guess: Bio.PopGen.FDist was deprecated in Release 1.68, removed in Release 1.70. So we don't need to worry about fdist2 anymore.<br><br>Perhaps you will have some pull requests to update the Docker images?<br><br>Peter<br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, May 9, 2020 at 6:40 PM Daley, Christopher <<a href="mailto:dalchr28@evergreen.edu">dalchr28@evergreen.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">




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Glad it was a simple fix.</div>
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I started building a Docker container to run the full tests locally based on the <a href="https://github.com/biopython/biopython_docker" id="gmail-m_6253262022126358377LPNoLP702564" target="_blank">
https://github.com/biopython/biopython_docker</a> repo, updated to Ubuntu 18.04 and Python 3.6. In doing so, I discovered that the download link for fdist2 is dead and there doesn't seem to be any other source for it online. Checking the other links it also
 seems like <a href="http://xxmotif.genzentrum.lmu.de/index.php" id="gmail-m_6253262022126358377LPlnk110296" target="_blank">
http://xxmotif.genzentrum.lmu.de</a> is down as well. The Bioconda package points to this github repo:
<a href="https://github.com/soedinglab/xxmotif" id="gmail-m_6253262022126358377LPNoLP853185" target="_blank">https://github.com/soedinglab/xxmotif</a></div>
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Any thoughts on how to proceed? <br>
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Chris<br>
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<div id="gmail-m_6253262022126358377divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Peter Cock <<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>><br>
<b>Sent:</b> Friday, May 8, 2020 1:34 PM<br>
<b>To:</b> Daley, Christopher <<a href="mailto:dalchr28@evergreen.edu" target="_blank">dalchr28@evergreen.edu</a>><br>
<b>Cc:</b> Michiel de Hoon <<a href="mailto:mjldehoon@yahoo.com" target="_blank">mjldehoon@yahoo.com</a>>; <a href="mailto:biopython@biopython.org" target="_blank">biopython@biopython.org</a> <<a href="mailto:biopython@biopython.org" target="_blank">biopython@biopython.org</a>><br>
<b>Subject:</b> Re: [Biopython] Volunteers for making Biopython release 1.77</font>
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<div dir="ltr">Good work on this documentation fix Chris - something I was hoping we'd fixed for the next release:
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<div><a href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiopython%2Fbiopython%2Fissues%2F2502&data=02%7C01%7Cdalchr28%40evergreen.edu%7C7b4f8ecaf310434a3ef708d7f38f3ab5%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637245668819672472&sdata=vURpurv9OtDscqOlvhwzLAJRpTkXIL8kBBdThBPixb4%3D&reserved=0" target="_blank">https://github.com/biopython/biopython/issues/2502</a><br>
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<div>Another important task (which on re-reading might be made even more explicit) is running all the tests locally, including the online tests (since we skip those on TravisCI and AppVeyor). This occasionally throws up nasty surprises:</div>
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<div><a href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbiopython.org%2Fwiki%2FBuilding_a_release&data=02%7C01%7Cdalchr28%40evergreen.edu%7C7b4f8ecaf310434a3ef708d7f38f3ab5%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637245668819672472&sdata=lrcab79xhC4o2iSgzIe%2Bcy%2FGmqcPlVB4cgzdqzk9HSw%3D&reserved=0" target="_blank">https://biopython.org/wiki/Building_a_release</a><br>
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<div>Peter</div></div>
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