<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Hi Peter,</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Yes, that's me. I've been wanting to contribute more but this year hasn't exactly gone to plan...
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I'm happy to start today and go through the issues and pull requests and we can set up a workflow that you feel is the most manageable.</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Cheers</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Chris<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> Peter Cock <p.j.a.cock@googlemail.com><br>
<b>Sent:</b> Wednesday, May 6, 2020 8:40 AM<br>
<b>To:</b> Daley, Christopher <dalchr28@evergreen.edu><br>
<b>Cc:</b> Michiel de Hoon <mjldehoon@yahoo.com>; biopython@biopython.org <biopython@biopython.org><br>
<b>Subject:</b> Re: [Biopython] Volunteers for making Biopython release 1.77</font>
<div> </div>
</div>
<div>
<div dir="ltr">Hi Christopher, is this you on GitHub with one pull request to Biopython already?
<div><br>
</div>
<div><a href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fchebizarro&data=02%7C01%7Cdalchr28%40evergreen.edu%7C19fff98a94fd48ec146808d7f1d3c80e%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243764213082843&sdata=l4wghnNFxk03ZR6a9MgIJXhPEINA0rC%2BEI8Cj5aX634%3D&reserved=0" originalsrc="https://github.com/chebizarro" shash="R6iCqYBCwr5t1q7DijYYEYaeMEHJnM2mQ5IPpIrBCcJMvW0CBOMcM4FdUYNzaQ6RlS0kGG5yzpBU2We96t/idrBQu++RZqvEh0Rlzno3uscyQMZCU1a9Bn0DBU09XT+VIAYqvasgQuMPrOmBdS6x+JVOgEOLxKGRZGfg01My+Ug=">https://github.com/chebizarro</a></div>
<div>
<div><a href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiopython%2Fbiopython%2Fpull%2F2349&data=02%7C01%7Cdalchr28%40evergreen.edu%7C19fff98a94fd48ec146808d7f1d3c80e%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243764213082843&sdata=T%2BRqIl7u6RJE0mOyBt38tv0Xz67A2L0y0DsbqK%2BQrLM%3D&reserved=0" originalsrc="https://github.com/biopython/biopython/pull/2349" shash="GOzYZ7ENdjnbfqjQ7Tp9DcRxNDc/Be+lSZ2KV3+DgEwZQjzzeh6AKwdYvE//20VaS6q/2ykTLLWQ5Qso8u3C1I4i2PApn1eabRELTmXMoFQykTDrRRv3Yh2vHLgaNOE9rkhDSvKEPmDlTuQuYal92Iil8FIabcS8mdVJ0yFTswg=">https://github.com/biopython/biopython/pull/2349</a><br>
</div>
<div><br>
</div>
<div>Some of the release steps need accounts or write permissions, but we could do most of it via pull requests so that doesn't stop you taking a very active role.</div>
<div><br>
</div>
<div>First is working out what if any blocking issues remain to be addressed before calling a commit freeze and doing the release. Do you have any thoughts on this? Even additional eyes on the open issues and pull requests would be helpful there.</div>
<div><br>
</div>
<div>Thank you, </div>
<div><br>
</div>
<div>Peter</div>
</div>
</div>
<br>
<div class="x_gmail_quote">
<div dir="ltr" class="x_gmail_attr">On Wed, May 6, 2020 at 3:37 PM Daley, Christopher <<a href="mailto:dalchr28@evergreen.edu" target="_blank">dalchr28@evergreen.edu</a>> wrote:<br>
</div>
<blockquote class="x_gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div>
<div dir="auto" style="direction:ltr; margin:0px; padding:0px; font-family:sans-serif; font-size:11pt; color:black">
I missed the original message due to aggressive spam filtering by our IT dept.<br>
</div>
<div dir="auto" style="direction:ltr; margin:0px; padding:0px; font-family:sans-serif; font-size:11pt; color:black">
I'd be very much interested in managing a release, especially now the mid quarter rush is over. I've looked at the process and can pretty much get started straight away.<br>
</div>
<div dir="auto" style="direction:ltr; margin:0px; padding:0px; font-family:sans-serif; font-size:11pt; color:black">
Chris Daley <br>
<br>
</div>
<div dir="auto" style="direction:ltr; margin:0px; padding:0px; font-family:sans-serif; font-size:11pt; color:black">
<span id="x_gmail-m_198720815412801420gmail-m_-5680398779240223709OutlookSignature">
<div dir="auto" style="direction:ltr; margin:0px; padding:0px; font-family:sans-serif; font-size:11pt; color:black">
Sent from my Verizon, Samsung Galaxy smartphone</div>
</span><br>
</div>
<hr style="display:inline-block; width:98%">
<div id="x_gmail-m_198720815412801420gmail-m_-5680398779240223709divRplyFwdMsg" dir="ltr">
<font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> Biopython <biopython-bounces+dalchr28=<a href="mailto:evergreen.edu@mailman.open-bio.org" target="_blank">evergreen.edu@mailman.open-bio.org</a>> on behalf of Peter Cock <<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>><br>
<b>Sent:</b> Wednesday, May 6, 2020 7:11:32 AM<br>
<b>To:</b> Michiel de Hoon <<a href="mailto:mjldehoon@yahoo.com" target="_blank">mjldehoon@yahoo.com</a>><br>
<b>Cc:</b> <a href="mailto:biopython@biopython.org" target="_blank">biopython@biopython.org</a> <<a href="mailto:biopython@biopython.org" target="_blank">biopython@biopython.org</a>><br>
<b>Subject:</b> Re: [Biopython] Volunteers for making Biopython release 1.77</font>
<div> </div>
</div>
<div>
<div dir="ltr">Perhaps I will have to do it again? Anyway - are there any open issues you all think need to be fixed before the release? My initial thoughts are just these two:
<div><br>
</div>
<div>NCBI BLAST v2.10.0 updates with arguments and DB changes:</div>
<div><a href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiopython%2Fbiopython%2Fissues%2F2863&data=02%7C01%7Cdalchr28%40evergreen.edu%7C19fff98a94fd48ec146808d7f1d3c80e%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243764213092841&sdata=lQfFkK9F9P%2B2k%2Bb89gahILSNx7guZXqU6kBHghsXZjs%3D&reserved=0" originalsrc="https://github.com/biopython/biopython/issues/2863" shash="MaS6bpkghdOfkFLDj3ek7+yGnPnx8vuAfCJuFErdaBIxXb01c6AQ6xkJactnpCVhOhdpHgZrawf3nQUwO3YMgIdyd03O3+n4NM0kT2ZLAkDrikc1lFnj+K+EBpU8ljXCe+Oo5yddS+JbVUGsVcXCvN5p+iKUPNbJfJpYlT2IRfo=" target="_blank">https://github.com/biopython/biopython/issues/2863</a><br>
</div>
<div><br>
</div>
<div>UniProt release 2019_11 changes FT and CC lines<br>
</div>
<div><a href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbiopython%2Fbiopython%2Fissues%2F2417&data=02%7C01%7Cdalchr28%40evergreen.edu%7C19fff98a94fd48ec146808d7f1d3c80e%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243764213092841&sdata=aVj2i5yONk%2B3NX2b48X3GPJFktnkEtSbYwb0q%2BEa%2BEg%3D&reserved=0" originalsrc="https://github.com/biopython/biopython/issues/2417" shash="AKqJm5KdhknEZ2qs0XtwCGUILnd5WIX7dJDgJyLGG+NErazwTc1TaZbjwcsoUj+YVHsr3I2sjt9M/qIPOduCmaQWEqFHg/bRHwnLr8XkdA1xHNuJGcjOerwSTndQxNhqH2b2ZYY+eYn+vGDfyNgOyOwxgEaSH9VZyBoyvXYhIdk=" target="_blank">https://github.com/biopython/biopython/issues/2417</a><br>
</div>
<div>(might be resolved already, need triage)</div>
<div><br>
</div>
<div>Peter</div>
</div>
<br>
<div>
<div dir="ltr">On Fri, May 1, 2020 at 10:01 AM Michiel de Hoon <<a href="mailto:mjldehoon@yahoo.com" target="_blank">mjldehoon@yahoo.com</a>> wrote:<br>
</div>
<blockquote style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div>
<div style="font-family:"Helvetica Neue",Helvetica,Arial,sans-serif; font-size:10px">
<div dir="ltr">
<div>
<div dir="ltr">Hi all,</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">Recent updates to Biopython have focused on removing the old Python2-specific code and cleaning up the code for Python3.</div>
<div dir="ltr">Since this is now essentially finished, now would be a good time to make the next Biopython release (1.77). Also, this will be the last release before we start removing alphabets from Biopython.</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">Is anybody (especially junior people) interested in managing this release?</div>
<div dir="ltr">The release process is now well documented:<br>
</div>
<div><br>
</div>
<div><a shape="rect" href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbiopython.org%2Fwiki%2FBuilding_a_release&data=02%7C01%7Cdalchr28%40evergreen.edu%7C19fff98a94fd48ec146808d7f1d3c80e%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243764213102840&sdata=al5osrGOxCTGxeEUUaojKewYWG09NlOCrYKcB3iwP74%3D&reserved=0" originalsrc="https://biopython.org/wiki/Building_a_release" shash="rGYaKYiNnm7ce46URkyWL6bnbxOtsE8wuFhaSOr84jB2A150UqAPXaS94DFMV31JxpsbxeuCmw4srSnotoToXrH6w2xAeSx0sQBgDdHE6l/c4rDdF3UrNwauVqXz+kQuvVMFiqFfWzeHwKqCansExyCDZZyq/VCZgIMPZ719jkE=" rel="nofollow" target="_blank">https://biopython.org/wiki/Building_a_release</a><br clear="none">
</div>
<div><br>
</div>
<div>It also entails looking at recent bug reports and seeing if any of them are sufficiently important that they should be fixed before the release can be made.</div>
<div><br>
</div>
<div dir="ltr">If any volunteers could write to the mailing list, then that would be great.</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">Thanks!</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">-Michiel<br>
</div>
</div>
</div>
</div>
</div>
_______________________________________________<br>
Biopython mailing list - <a href="mailto:Biopython@mailman.open-bio.org" target="_blank">
Biopython@mailman.open-bio.org</a><br>
<a href="https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmailman.open-bio.org%2Fmailman%2Flistinfo%2Fbiopython&data=02%7C01%7Cdalchr28%40evergreen.edu%7C19fff98a94fd48ec146808d7f1d3c80e%7C22adcff7c06f49a68f2050711c40ddaa%7C0%7C0%7C637243764213102840&sdata=pGoAIrq5IoVCKV4T4JZXhIArl6Imo4PCG%2BBl4DSomdw%3D&reserved=0" originalsrc="https://mailman.open-bio.org/mailman/listinfo/biopython" shash="hW8HNNSKR29OcwMwIx8IDg0IAKSYxAn9Hth/siaas84j5NaYd7BMhAAVnuQAon1uMnqdwzHA5xXyJMj8d+gevkG5Fo7mnTgRDhOygE2GxeXKVQ7p1OaY6xWiyjBoo6JDnBW5hThgBFqRlPYrBd1pL2B3oigObR7Xn9p2m1+fE7E=" rel="noreferrer" target="_blank">https://mailman.open-bio.org/mailman/listinfo/biopython</a></blockquote>
</div>
</div>
</div>
</blockquote>
</div>
</div>
</body>
</html>