<div dir="ltr">Thanks Bow - do you want to do a pull request removing the<div>experimental warning (and the bits in the tests to ignore it),</div><div>or should I?<div><br></div><div>Another interesting proposal is from Michiel about hiding</div><div>the alphabet in the Seq object's __repr__ output:</div><div><br></div><div><a href="https://github.com/biopython/biopython/issues/1674">https://github.com/biopython/biopython/issues/1674</a><br></div><div><br></div><div>Peter<br><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jun 4, 2018 at 10:39 PM, Wibowo Arindrarto <span dir="ltr"><<a href="mailto:w.arindrarto@gmail.com" target="_blank">w.arindrarto@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi Peter, everyone,<br>
<br>
It's been a while that the warning exists for SearchIO. I think it can<br>
be lifted for the next release as I don't expect any major changes to<br>
the API anytime soon.<br>
<br>
The index_db() PR also seems like a good inclusion for the next release.<br>
<br>
Cheers,<br>
Bow<br>
<div><div class="gmail-h5">On Mon, Jun 4, 2018 at 2:13 PM Peter Cock <<a href="mailto:p.j.a.cock@googlemail.com">p.j.a.cock@googlemail.com</a>> wrote:<br>
><br>
> Dear Biopythoneers,<br>
><br>
> I am hoping we can release Biopython 1.72 in the next<br>
> week or two - mainly so I can include this work in the<br>
> Biopython Project Update talk at GCCBOSC 2018:<br>
><br>
> <a href="https://gccbosc2018.sched.com/" rel="noreferrer" target="_blank">https://gccbosc2018.sched.com/</a><br>
><br>
> To that end, are there any outstanding issues or pending<br>
> pull requests which we ought to address now? e.g. these<br>
> seem worth including:<br>
><br>
> <a href="https://github.com/biopython/biopython/pull/1655" rel="noreferrer" target="_blank">https://github.com/biopython/<wbr>biopython/pull/1655</a><br>
> New pairwise alignment module<br>
><br>
> <a href="https://github.com/biopython/biopython/pull/1509" rel="noreferrer" target="_blank">https://github.com/biopython/<wbr>biopython/pull/1509</a><br>
> Add translate method to Bio.SeqFeature<br>
><br>
> <a href="https://github.com/biopython/biopython/pull/1619" rel="noreferrer" target="_blank">https://github.com/biopython/<wbr>biopython/pull/1619</a><br>
> Preserve on-disk order in SeqIO & SearchIO indexes<br>
> (Does anyone want to try benchmarking the changes?)<br>
><br>
> Bow - can we remove the experimental warning from<br>
> Bio.SearchIO now?<br>
><br>
> Thanks,<br>
><br>
> Peter<br>
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</blockquote></div><br></div></div></div></div>