<div dir="ltr">The project on RNA sequencing as an assay for gene expression.<div><br></div><div>I found a literature about the subject- <a href="https://www.ncbi.nlm.nih.gov/pubmed/27585245">https://www.ncbi.nlm.nih.gov/pubmed/27585245</a></div><div>but I will need a better understanding and a discussion in terms of software engineering perspective.</div><div><br></div><div>Regards,</div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Mar 7, 2018 at 5:36 PM, Peter Cock <span dir="ltr"><<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Do you mean a project working with RNA secondary structure,<br>
or RNA sequencing?<br>
<span class="HOEnZb"><font color="#888888"><br>
Peter<br>
</font></span><div class="HOEnZb"><div class="h5"><br>
On Wed, Mar 7, 2018 at 8:39 AM, Sourav Singh <<a href="mailto:ssouravsingh12@gmail.com">ssouravsingh12@gmail.com</a>> wrote:<br>
> Hello,<br>
><br>
> I am interested in the project mentioned above and I am working on a<br>
> proposal for the same.<br>
><br>
> Would anyone be interested to take a look and make suggestions?<br>
><br>
> Regards,<br>
><br>
> Sourav<br>
><br>
> Sent from my Phone.Excuse any mistakes and brevity.<br>
><br>
> On Feb 28, 2018 5:02 PM, "Sourav Singh" <<a href="mailto:ssouravsingh12@gmail.com">ssouravsingh12@gmail.com</a>> wrote:<br>
>><br>
>> Hello,<br>
>><br>
>> The topic looks interesting to me. Are there any resources which touch<br>
>> upon the subject of the project?<br>
>><br>
>> Regards,<br>
>><br>
>> Sourav<br>
>><br>
>> Sent from my Phone.Excuse any mistakes and brevity.<br>
>><br>
>> On Feb 28, 2018 3:26 PM, "Peter Cock" <<a href="mailto:p.j.a.cock@googlemail.com">p.j.a.cock@googlemail.com</a>> wrote:<br>
>>><br>
>>> On Tue, Feb 27, 2018 at 11:33 PM, Sourav Singh <<a href="mailto:ssouravsingh12@gmail.com">ssouravsingh12@gmail.com</a>><br>
>>> wrote:<br>
>>> > Hello,<br>
>>> ><br>
>>> > Thanks for the reply!<br>
>>> ><br>
>>> > For RNA Seq, Are we talking about adding modules for parsing of RNA<br>
>>> > secondary structure and nucleotides? If so, The project looks<br>
>>> > interesting to<br>
>>> > me. The only problem is I don't see the branch created by Kristian<br>
>>> > Rothner,<br>
>>> > so the code may need to be written from scratch.<br>
>>><br>
>>> No, although that's an interesting area in itself - and has been talked<br>
>>> about before for GSoC.<br>
>>><br>
>>> I meant RNA sequencing as a quantitative assay for gene expression,<br>
>>> as an alternative to the older microarray technology used for gene<br>
>>> expression analysis. This is a vast area and I don't immediately see<br>
>>> a project idea here for Biopython.<br>
>>><br>
>>> > I am also a bit worried about whether there would be anyone willing to<br>
>>> > mentor a project for Biopython.<br>
>>><br>
>>> Yes, sadly that is currently a bottleneck.<br>
>>><br>
>>> Peter<br>
</div></div></blockquote></div><br></div>