<div dir="ltr"><div>You should cite the application note (<a href="https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btp163">https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btp163</a>) and any specific paper of the modules you used, e.g. Bio.PDB (<a href="https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btg299">https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btg299</a>).<br><br></div>See here: <a href="http://biopython.org/wiki/Documentation">http://biopython.org/wiki/Documentation</a><br></div>