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<p class="MsoNormal">Hi, everyone,<o:p></o:p></p>
<p class="MsoNormal">I am new to this mail list, so please bear with my ignorance.
<o:p></o:p></p>
<p class="MsoNormal">I am using SeqIO to parse the hla.dat file from the IMGT/HLA database (https://github.com/ANHIG/IMGTHLA/tree/3160):
<o:p></o:p></p>
<p class="MsoNormal">Handle='hla.dat'<o:p></o:p></p>
<p class="MsoNormal">records=SeqIO.parse(handle, 'imgt')<o:p></o:p></p>
<p class="MsoNormal">The code only works for files up to version 3.16.0, but not any data files after that. The following was raised:
<o:p></o:p></p>
<p class="MsoNormal">ValueError: Did not recognise the ID line layout:<o:p></o:p></p>
<p class="MsoNormal">ID HLA00001; SV 1; standard; DNA; HUM; 3503 BP.<o:p></o:p></p>
<p class="MsoNormal">Apparently the format has changed in the data file, which looks like this for the ID line before 3.16.0:
<o:p></o:p></p>
<p class="MsoNormal">ID HLA00001 standard; DNA; HUM; 3503 BP.<o:p></o:p></p>
<p class="MsoNormal">Could someone tell me how the module can be updated to parse current and future data files. Thank you so much!!<o:p></o:p></p>
<p class="MsoNormal">Chang<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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