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<p class="MsoNormal"><span lang="EN-GB">Dear list,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Is there a way to get the entire entry of a just parsed SwissProt entry as string?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Motivation: I want to write a simple filter for UniProt/SwissProt .dat files like this<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="NL">fh=open(sys.stdin.fileno())<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">for rec in SwissProt.parse(fh):<o:p></o:p></span></p>
<p class="MsoNormal" style="text-indent:9.0pt"><span lang="EN-GB">if (“something I want to check for matches”):<o:p></o:p></span></p>
<p class="MsoNormal" style="text-indent:9.0pt"><span lang="EN-GB"> print(rec.entry_as_string)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">and not reformat each and every field for compatible output (which would take half a life-time to get correct and probably still be error-prone).<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"> Bastien<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:8.5pt;color:#008FD5">-- <br>
DSM Nutritional Products Microbia Inc | Bioinformatics<br>
60 Westview Street | Lexington, MA 02421 | United States<br>
Phone +1 781 259 7613 </span><span lang="EN-GB" style="font-size:8.5pt;color:#008FD5">| Fax +1 781 259 0615</span><span lang="EN-GB"><o:p></o:p></span></p>
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