<div dir="ltr">Hi,<div><br></div><div>I am having trouble using Bio.PDB.NACCESS.</div><div><br></div><div>The following is my code:</div><div><div>import Bio.PDB.NACCES as nac</div></div><div><div>data = nac.run_naccess(structure[0],"1BVU.pdb")</div></div><div><br></div><div>I get the following error:</div><div><div>WindowsError Traceback (most recent call last)</div><div><ipython-input-54-1d30779fea29> in <module>()</div><div>----> 1 data = nac.run_naccess(structure[0],"1BVU.pdb")</div><div><br></div><div>C:\Users\user\AppData\Local\Enthought\Canopy\User\lib\site-packages\Bio\PDB\NACCESS.py in run_naccess(model, pdb_file, probe_size, z_slice, naccess, temp_path)</div><div> 31 </div><div> 32 # make temp directory;</div><div>---> 33 tmp_path = tempfile.mkdtemp(dir=temp_path)</div><div> 34 </div><div> 35 # file name must end with '.pdb' to work with NACCESS</div><div><br></div><div>C:\Users\user\AppData\Local\Enthought\Canopy\App\appdata\canopy-1.5.1.2730.win-x86_64\lib\tempfile.pyc in mkdtemp(suffix, prefix, dir)</div><div> 331 file = _os.path.join(dir, prefix + name + suffix)</div><div> 332 try:</div><div>--> 333 _os.mkdir(file, 0700)</div><div> 334 return file</div><div> 335 except OSError, e:</div><div><br></div><div>WindowsError: [Error 3] The system cannot find the path specified: '/tmp/tmpdetkbw' </div></div><div><br></div><div>Regards,</div><div>Alaksh</div><div><div><br></div>-- <br><div class="gmail_signature"><div dir="ltr">Alaksh Choudhury<div>Graduate Student | Gill lab and Kaar lab</div><div>Department of Chemical Engineering</div><div>University of Colorado, Boulder</div><div><br></div></div></div>
</div></div>