<div dir="ltr">Hi Peter,<div><br></div><div>If I understand Alexey's question right, I did have the same problem before. I wrote a bunch of scripts to work around the problem, but it appears you have something more straight forward. Can you elaborate?</div><div><br></div><div>Thanks,</div><div><br></div><div>Dave</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Mar 4, 2015 at 1:18 AM, Peter Cock <span dir="ltr"><<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span class="">On Wed, Mar 4, 2015 at 6:12 AM, Alexey Morozov<br>
<<a href="mailto:alexeymorozov1991@gmail.com">alexeymorozov1991@gmail.com</a>> wrote:<br>
> Is there any support for compiled BLAST databases (*.pin/*.phr/*.psq) I/O in<br>
> biopython? I need to get complete sequences that match, not just hsps that<br>
> Bio.Blast.NCBIXML can read.<br>
<br>
</span>No, but you can call the NCBI BLAST+ tool blastdbcmd to do this<br>
(or fastacmd from legacy NCBI BLAST).<br>
<br>
Peter<br>
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</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature"><div>David Shin, Ph.D</div><div>Lawrence Berkeley National Labs</div><div>1 Cyclotron Road</div><div>MS 83-R0101</div><div>Berkeley, CA 94720</div><div>USA</div></div>
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