<div dir="ltr">Perhaps you could give a try at GraphLan which seems to be written in python.<div><a href="http://huttenhower.sph.harvard.edu/graphlan">http://huttenhower.sph.harvard.edu/graphlan</a><br></div><div>Best</div><div><br></div><div>Denis</div></div><div class="gmail_extra"><br><div class="gmail_quote">2015-02-24 15:36 GMT+01:00 Alan <span dir="ltr"><<a href="mailto:alanwilter@gmail.com" target="_blank">alanwilter@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi there,<div><br></div><div><a href="http://itol.embl.de/" target="_blank">http://itol.embl.de/</a> is nice but not practical for me anymore.</div><div><br></div><div>I am wondering if there are python tools/scripts that could help me to achieve similar results.</div><div><br></div><div>To start, I basically have 2 sets of taxons: one at phyla level and another at species level and I just want a kind of histogram of species per phylum as seen in e.g. <a href="http://itol.embl.de/shared/awss" target="_blank">http://itol.embl.de/shared/awss</a>. Then I will extend it for including other data.</div><div><br></div><div>Many thanks in advance,</div><div><br></div><div>Alan</div><span class="HOEnZb"><font color="#888888"><div><br></div><div>-- <br><div><div dir="ltr">Alan Wilter SOUSA da SILVA, DSc<div>Bioinformatician, UniProt</div><div>European Bioinformatics Institute (EMBL-EBI)</div><div>European Molecular Biology Laboratory</div><div>Wellcome Trust Genome Campus</div><div>Hinxton</div><div>Cambridge CB10 1SD</div><div>United Kingdom</div><div>Tel: <a href="tel:%2B44%20%280%291223%20494588" value="+441223494588" target="_blank">+44 (0)1223 494588</a></div></div></div>
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