<p dir="ltr">Hi Mark, </p>
<p dir="ltr">Recent versions of osx changed the location of the sdks and have been known to cause some issues.. Did you upgrade the machine to Mavericks from a previous version or was it a clean install? </p>
<p dir="ltr">I would try reinstalling xcode and checking your profile or bashrc files for clues. It might be a broken installation of gcc where its include and lib paths are still pointing to the old locations, or just old definitions in these files. </p>
<p dir="ltr">Cheers, <br>
João </p>
<div class="gmail_quote">Em 18/07/2014 09:57, "Mark Budde" <<a href="mailto:markbudde@gmail.com">markbudde@gmail.com</a>> escreveu:<br type="attribution"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Hi Peter,<div>Xcode 5.1.1 is installed on my machine, and I have successfully installed older versions of Biopython. I have followed the instructions about installing xcode command line tools, but that also doesn't solve the problem. I installed EPD over a year ago, so I might have to try a fresh install, but was hoping to avoid that if this is a known problem. Since nobody else seems to have run into this problem, I guess it must be specific to something about my machine.</div>
<div>Thanks again,</div><div>Mark</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Jul 17, 2014 at 3:00 AM, Peter Cock <span dir="ltr"><<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div>On Wed, Jul 16, 2014 at 8:03 PM, Mark Budde <<a href="mailto:markbudde@gmail.com" target="_blank">markbudde@gmail.com</a>> wrote:<br>
> Hi all,<br>
> I am trying to upgrade to the current version on my Mac, but get an error.<br>
> I've tried the suggestions online about<br>
><br>
> $ xcode-select --install<br>
><br>
> but that doesn't work.<br>
><br>
</div>> ...<br>
<div>><br>
> error: command 'gcc' failed with exit status 1<br>
<br>
</div>Hi Mark,<br>
<br>
Those problems suggest that XCode itself is not installed. Since<br>
you are running OSX 10.9 this is available for free from the Apple<br>
App Store (but it is a large download).<br>
<br>
i.e. You need to install XCode, *then* the command line tools by<br>
running 'xcode-select --install', or equivalently via the XCode GUI.<br>
<br>
Can you suggest a clearer phrasing for our instructions here?<br>
<a href="http://biopython.org/wiki/Download" target="_blank">http://biopython.org/wiki/Download</a><br>
<br>
Also, since you are using enthought's Python they may offer a<br>
Biopython packaged installation route instead?<br>
<br>
Regards,<br>
<br>
Peter<br>
</blockquote></div><br></div>
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