<div dir="ltr">Hi :) I'm newbie to BioPython and I am trying to do the following:<div><br></div><div>I have a set of different pdbs that I want to merge together into a single file. I would like to take into consideration that there could be issues with the naming, so, after reading a few other posts in this same list, I came up with the following code:</div>
<div><br></div><div><div> list_parsers=[]</div><div> list_of_structures=[]</div><div> for index in range(len(list_of_filenames)):</div><div> parser=PDBParser()</div><div> list_parsers.append(parser)</div>
<div> structure=parser.get_structure(list_of_filenames[index][:-4],list_of_filenames[index])</div><div> list_of_structures.append(structure)</div><div> i_chain = 65</div><div> for structure in list_of_structures:</div>
<div> for chain in structure:</div><div> <a href="http://chain.id">chain.id</a> = chr(i_chain)</div><div> i_chain += 1</div><div> io=PDBIO() </div><div> for structure in list_of_structures:</div>
<div> io.set_structure(structure)</div><div> io.save(clust_fold+key[:-4]+"_fused.pda")</div><div><br></div><div style>This is not working, as I guess i'm just changing the structure set each time I do io.set_structure, and writing the last one. And as there is not such a thing as the append_structure() method I have just tried a silly thing. So my question would be which is the best way to get the pdbs merged? Should I save as independent unfold entities and then write them by using a Select class?</div>
<div style><br></div><div style>Thanks in advance and regards,</div><div><div><div dir="ltr"><span style="font-family:arial,sans-serif;font-size:13px;border-collapse:collapse;color:rgb(34,34,34)"><p><font face="arial, helvetica, sans-serif">Claudia Millán (<a href="mailto:cmncri@ibmb.csic.es" style="color:rgb(17,85,204)" target="_blank">cmncri@ibmb.csic.es</a>)</font></p>
<p><font face="arial, helvetica, sans-serif">Crystallographic Methods Group</font></p><p><font face="arial, helvetica, sans-serif"> <a href="http://chango.ibmb.csic.es" target="_blank">http://chango.ibmb.csic.es</a> <br>
</font></p>
<p><font face="arial, helvetica, sans-serif">Institut de Biologia Molecular de Barcelona (IBMB-CSIC)</font></p><p><font face="arial, helvetica, sans-serif">Barcelona, Spain</font></p></span></div></div>
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