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<div class="moz-cite-prefix">Have a look at:<br>
<br>
<a class="moz-txt-link-freetext" href="https://github.com/mschubert/python-obo">https://github.com/mschubert/python-obo</a><br>
<br>
(warning: it's not very well developed but reads OBO files into
networkx objects - then you can get the ancestors easily)<br>
<br>
On 06/14/2014 08:16 PM, Iddo Friedberg wrote:<br>
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<blockquote
cite="mid:CABm4-MQqn3rNkUUZDyouTD_=yPpnb=q+9TBsetJrRMpEGhtx6g@mail.gmail.com"
type="cite">
<div dir="ltr"><span
style="font-family:arial,sans-serif;font-size:13px">hi,</span>
<div style="font-family:arial,sans-serif;font-size:13px"><br>
</div>
<div style="font-family:arial,sans-serif;font-size:13px">Does
anybody have a script that can extract an ancestor list of an
ontology term (or all ontology terms) from an OBO file? Or
something close enough so I can modify it?<br clear="all">
<div><br>
</div>
<div>Thanks,</div>
<div><br>
</div>
<div>Iddo</div>
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-- <br>
Iddo Friedberg<br>
<a moz-do-not-send="true"
href="http://iddo-friedberg.net/contact.html" target="_blank">http://iddo-friedberg.net/contact.html</a><br>
++++++++++[>+++>++++++>++++++++>++++++++++>+++++++++++<<<<<-]>>>>++++.><br>
++++++..----.<<<<++++++++++++++++++++++++++++.-----------..>>>+.-----.<br>
.>-.<<<<--.>>>++.>+++.<+++.----.-.<++++++++++++++++++.>+.>.<++.<<<+.>><br>
>>----.<--.>++++++.<<<<------------------------------------.<br>
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