[Biopython] zero-length feature

Anne Pajon ap12 at sanger.ac.uk
Mon Mar 22 11:24:43 UTC 2010


Hi Peter,

Here is the feature location string I would like to achieve in the  
EMBL output:

FT   gap             422950..422950
FT                   /estimated_length=1


Regards,
Anne.

On 22 Mar 2010, at 09:31, Peter wrote:

> On Fri, Mar 19, 2010 at 7:19 PM, Anne Pajon <ap12 at sanger.ac.uk> wrote:
>> Dear,
>>
>> I am having trouble writing out EMBL file for feature of size one.
>> I've modified InsdcIO.py to fit my need. Because when I try to  
>> submit my
>> file to EMBL, it comes back with this comment: badly formatted -- you
>> need a .. between locations.
>
> Hi Anne,
>
> Could you show us the feature location string you are trying to
> achieve in the EMBL output? That would help me to follow -
> an example FT entry would be great.
>
> Peter

--
Dr Anne Pajon - Pathogen Genomics, Team 81
Sanger Institute, Wellcome Trust Genome Campus, Hinxton
Cambridge CB10 1SA, United Kingdom
+44 (0)1223 494 798 (office) | +44 (0)7958 511 353 (mobile)



-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE. 



More information about the Biopython mailing list