[Biopython] Biopython and Snow Leopard

Peter biopython at maubp.freeserve.co.uk
Wed Sep 9 16:21:28 UTC 2009


On Wed, Sep 9, 2009 at 5:16 PM, Kelly F Oakeson<kelly.oakeson at utah.edu> wrote:
> Peter,
> It looks like I may have solved it! Taking the advice from the post on
> http://mtrichardson.com/2009/09/fixing-jinja2-and-pycrypto-and-probably-others-on-snow-leopard/
> I changed the makefile in /Library/Frameworks/Python.framework/
> Versions/2.6/lib/python2.6/config/Makefile replacing all of the
> occurrences of 10.4u with 10.6.
> I then ran
> $python setup.py build
> $python setup.py test
> $sudo python setup.py install
>
> Everything worked just fine without any gcc errors. This worked on
> both my MacBook pro and MacPro both running the 64 bit kernel.

That's great, but doesn't seem like a "proper" solution for us in
the long run. Did you run the Biopython unit tests? It would be
good to know they are all fine.

Peter



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