[BioPython] SProt module

km km at mrna.tn.nic.in
Fri Nov 17 19:25:55 UTC 2006


Hi,

Oh! - too late to know that. 
I have fixed it myself but  defining method for 'OH'- organism host apart from other changes.
anyway will check out the official version from cvs too.
thank you :)

regards
KM
-------------------------------------------------------------------
> Hi KM
> 
> As Chris points out, there have been a few format changes.  I'm pretty
> sure that BioPython has been updated to cope:
> 
> Bug 2131 - SProt.py fails to parse the current Swiss-Prot version 51.0
> http://bugzilla.open-bio.org/show_bug.cgi?id=2131
> Fixed
> 
> Bug 2043 - SProt.py fails to parse the current Swiss-Prot version (RX
> and OH lines are broken)
> http://bugzilla.open-bio.org/show_bug.cgi?id=2043
> Fixed
> 
> These changes where made after BioPython 1.42 was released.
> 
> I'm pretty sure that all you need to do is update the file
> Bio/SwissProt/SProt.py in your python site-library with the version from
> CVS, available here:
> 
> http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/SwissProt/SProt.py?cvsroot=biopython
> 
> (Or, if you would rather, get the entire latest source code from CVS,
> and build and install that).
> 
> If you find a problem with that code, then please let us know (ideally
> by logging a new bug).
> 
> Peter
> 



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