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Issue #3009 has been updated by Peter Cock.
<ul>
<li><strong>Status</strong> changed from <i>New</i> to <i>Closed</i></li>
<li><strong>% Done</strong> changed from <i>0</i> to <i>100</i></li>
</ul>
<p>I lost track of this and don't have those failing examples to hand.</p>
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<h1><a href="https://redmine.open-bio.org/issues/3009#change-15414">Bug #3009: Check the FASTA m10 alignment parser works with FASTA36</a></h1>
<ul><li>Author: Peter Cock</li>
<li>Status: Closed</li>
<li>Priority: Normal</li>
<li>Assignee: Biopython Dev Mailing List</li>
<li>Category: Main Distribution</li>
<li>Target version: Not Applicable</li>
<li>URL: </li></ul>
<p>Bill Pearson has just announced the release of FASTA36:<br /><a class="external" href="http://faculty.virginia.edu/wrpearson/fasta/fasta36/">http://faculty.virginia.edu/wrpearson/fasta/fasta36/</a></p>
<p>From his email,</p>
<blockquote>
<p>This version is a major update from FASTA version 35.<br />It's main new feature is the ability to report all<br />statistically significant alignments between a query<br />and library sequence (equivalent to BLAST's multiple<br />HSPs). All previous versions of the FASTA program<br />reported only the best alignment between the query<br />and library sequence, a serious shortcoming when<br />comparing a query protein to a multi-exon gene or<br />multi-domain protein.</p>
</blockquote>
<p>We need to check the FASTA36 -m 10 output, add this to<br />our unit tests, and update our parser as required.</p>
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