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Issue #2375 has been updated by Vincent Davis.
<ul>
<li><strong>Description</strong> updated (<a title="View differences" href="https://redmine.open-bio.org/journals/diff/15350?detail_id=1625">diff</a>)</li>
<li><strong>Status</strong> changed from <i>New</i> to <i>Closed</i></li>
<li><strong>Assignee</strong> changed from <i>Biopython Dev Mailing List</i> to <i>Vincent Davis</i></li>
<li><strong>% Done</strong> changed from <i>0</i> to <i>100</i></li>
</ul>
<p>Since this is being deprecated, I will just close this.<br />"Bio.PopGen.SimCoal has been deprecated, and we intend to " <br /> " remove it in a future release of Biopython. If you would like" <br /> " to continue using it, please contact the Biopython developers" <br /> " via the mailing list."</p>
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<h1><a href="https://redmine.open-bio.org/issues/2375#change-15350">Bug #2375: Coalescent support through Simcoal2</a></h1>
<ul><li>Author: Tiago Antao</li>
<li>Status: Closed</li>
<li>Priority: Normal</li>
<li>Assignee: Vincent Davis</li>
<li>Category: Main Distribution</li>
<li>Target version: Not Applicable</li>
<li>URL: </li></ul>
<p>Implement Coalescent support through Simcoal2.</p>
<p>Coalescent simulation support will be included not by creating a new coalescent simulator, but by using the existing Simcoal2.</p>
<p>This will include the ability to run and control Simcoal2 as well as other utilities like scenario generation (both demographies and genomes).</p>
<fieldset class="attachments"><legend>Files</legend>
<a href="https://redmine.open-bio.org/attachments/download/825/setup.py.diff">setup.py.diff</a>
(271 Bytes)<br />
<a href="https://redmine.open-bio.org/attachments/download/842/simcoaldiff.zip">simcoaldiff.zip</a>
(6.07 KB)<br />
<a href="https://redmine.open-bio.org/attachments/download/950/setup.py.diff">setup.py.diff</a>
(1.37 KB)<br />
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