<div dir="ltr"><div><div>Hi all,<br>I ran python2.7 setup.py test and all the test passed or where skipped as expected. However here are outputs I found strange:<br><br>running test<br>Python version: 2.7.6 (default, Jun 22 2015, 17:58:13) <br>[GCC 4.8.2]<br>Operating system: posix linux2<br>...<br>test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman'<br>ok<br>test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics<br>Can't setFont(Times-Roman) missing the T1 files?<br>Originally <type 'exceptions.TypeError'>: makeT1Font() argument 2 must be string, not None<br>...<br>test_PAML_baseml ... <br>Error: Number of sequences different in tree and seq files..<br>ok<br>test_PAML_codeml ... <br>Error: Number of sequences different in tree and seq files..<br>ok<br>...<br>test_SeqIO_PdbIO ... /home/lluis/Downloads/biopython-1.68/build/lib.linux-x86_64-2.7/Bio/SeqIO/PdbIO.py:187: BiopythonWarning: First line is not a 'HEADER'; can't determine PDB ID. Line: 'TITLE STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN\n'<br> "Line: %r" % firstline, BiopythonWarning)<br>/home/lluis/Downloads/biopython-1.68/build/lib.linux-x86_64-2.7/Bio/SeqIO/PdbIO.py:187: BiopythonWarning: First line is not a 'HEADER'; can't determine PDB ID. Line: 'REMARK INTRODUCED BUGS IN RESIDUES 2,3,4 AND WAT 67\n'<br> "Line: %r" % firstline, BiopythonWarning)<br>ok<br><br><br></div>All the rest seems ok and I could import it correctly on python2.7. I could test it for 3.4 too if no one can. <br><br></div>Lluís<br></div><div class="gmail_extra"><br><div class="gmail_quote">On 25 August 2016 at 19:13, Peter Cock <span dir="ltr"><<a href="mailto:p.j.a.cock@googlemail.com" target="_blank">p.j.a.cock@googlemail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span class="">On Thu, Aug 25, 2016 at 5:57 PM, Peter Cock <<a href="mailto:p.j.a.cock@googlemail.com">p.j.a.cock@googlemail.com</a>> wrote:<br>
> I'm about to do the MSI for Python 2.6 and 2.7 which for some reason<br>
> were not on the "script" - which with the new website setup is now extra<br>
> cumbersome: <a href="http://biopython.org/wiki/Building_a_release" rel="noreferrer" target="_blank">http://biopython.org/wiki/<wbr>Building_a_release</a><br>
<br>
</span>Now I recall why:<br>
<br>
<a href="http://mailman.open-bio.org/pipermail/biopython-dev/2015-October/021121.html" rel="noreferrer" target="_blank">http://mailman.open-bio.org/<wbr>pipermail/biopython-dev/2015-<wbr>October/021121.html</a><br>
<br>
This worked for Python 2.7, where <a href="https://bugs.python.org/issue1128" rel="noreferrer" target="_blank">https://bugs.python.org/<wbr>issue1128</a><br>
was fixed via <a href="https://bugs.python.org/issue7639" rel="noreferrer" target="_blank">https://bugs.python.org/<wbr>issue7639</a> but not Python 2.6<br>
where perhaps I patched my copy manually?<br>
<br>
<a href="https://github.com/biopython/biopython.github.io/commit/a42161f002f97f530c89e1870c4e631dbc702282" rel="noreferrer" target="_blank">https://github.com/biopython/<wbr>biopython.github.io/commit/<wbr>a42161f002f97f530c89e1870c4e63<wbr>1dbc702282</a><br>
<br>
I might try that tomorrow, but consider it quite a low priority.<br>
<div class="HOEnZb"><div class="h5"><br>
Peter<br>
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